View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16942_low_8 (Length: 250)
Name: NF16942_low_8
Description: NF16942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16942_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 27813415 - 27813653
Alignment:
| Q |
11 |
catagggcaaaaatcatttataagcagatataggataaagagcttaattaatcttaaattaatcaaaatctgcgactaacaacaaaaaatctaaa----- |
105 |
Q |
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| T |
27813415 |
cataaggcaaaaatcatttataagcagatataggataaagagcttaattaatcttaaattaatcaaaatctgcgactaacaacaaacaatctaaaaccag |
27813514 |
T |
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| Q |
106 |
agtatgcaatattatcaatgcaaacagaaaggatacctttacgctattagaggtttctaatagctcctcttaaaactatttcagaaagttatcaatattt |
205 |
Q |
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| T |
27813515 |
agtatgcaatattatcaatgcaaacagaaaggatacctttacactattggaggtttctaatag---ctcttaaaactatttcagaaagttatcaatattt |
27813611 |
T |
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| Q |
206 |
caggtaaagttatctactgcagtggcaccacataacaaaatc |
247 |
Q |
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| T |
27813612 |
caggtaaagttatctactgcagtggcactacataacaaaatc |
27813653 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 149
Target Start/End: Original strand, 6761839 - 6761872
Alignment:
| Q |
116 |
attatcaatgcaaacagaaaggatacctttacgc |
149 |
Q |
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| T |
6761839 |
attatcaatgcaaacagaaagggtacctttacgc |
6761872 |
T |
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