View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_high_12 (Length: 579)
Name: NF16943_high_12
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 530; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 23 - 564
Target Start/End: Complemental strand, 29333751 - 29333210
Alignment:
| Q |
23 |
gaatcttcacttcgcaaccctttcgaaccggatataaacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaacc |
122 |
Q |
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| T |
29333751 |
gaatcttcccttcgcaaccctttcgaaccggatataaacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaacc |
29333652 |
T |
|
| Q |
123 |
aagacgaatcactcctccatggcttcgaacttcaacaacacgtcgaaacgattcttcaatccaacgatctttcattgcttcaagaagtaatcgacgagta |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29333651 |
aagacgaatcactcctccatggcttcgaacttcaacaacacgtcgcaacgattcttcaatccaacgatctttcatcgcttcaagaagtaatcgacgagta |
29333552 |
T |
|
| Q |
223 |
cgcgaattccaaggacgaatcattattcacaattttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaattt |
322 |
Q |
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| T |
29333551 |
cgcgaattccaaggacgaatcattattcacaattttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaattt |
29333452 |
T |
|
| Q |
323 |
caacctccgattcaaacgagaatcgaaaccgttaatcatcttcttcaagttcttcccgaaggaattaacggtcctttcaattctattatcttactcgaac |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29333451 |
caacctccgattcaaacgagaatcgaaaccgttaatcatcttcttcaagttcttcccgaaggaattaacggtcctttcaattctattatcttactcgaac |
29333352 |
T |
|
| Q |
423 |
tgaagaatcctcttcttcattcgcttaaggcggaatctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgctgataggttttaccg |
522 |
Q |
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| T |
29333351 |
tgaagaatcctcttcttcattcgcttaaggcggaatctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgctgataggttttaccg |
29333252 |
T |
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| Q |
523 |
gtgttctcttggtggttgggtggagcttcttgagtatgttct |
564 |
Q |
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| T |
29333251 |
gtgttctcttggtggttgggtggagcttcttgagtatgttct |
29333210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 29305285 - 29305102
Alignment:
| Q |
109 |
catcgaagaaaaccaagacgaatcactcctccatggcttcgaacttcaacaacacgtcgaaacgattcttcaatccaacgatctttcattgcttcaagaa |
208 |
Q |
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||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||| ||||| | |||| | ||||||||| || || | | | |||||| |
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| T |
29305285 |
catcgaagaaaaccaagacagatcactcatccacggcttcgaacttcgacaacacgccgaaaggtttctcctatccaacgacctctcgtcgttgcaagaa |
29305186 |
T |
|
| Q |
209 |
gtaatcgacgagtacgcgaattccaaggacgaatcattattcacaattttcaaatcattcgcacatcattaccctaacgcattc |
292 |
Q |
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| T |
29305185 |
gcaatcgatgaatactctcaaaccaggaatcaatctttattcacgattttcaaatctttcacacttcattatcctaacgcattc |
29305102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 29322533 - 29322419
Alignment:
| Q |
50 |
ccggatataaacccgccaccgcgcaactacttggaagaaatagtcaacaaacgaagacgcatcgaagaaaaccaagacgaatcactcctccatggcttcg |
149 |
Q |
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|||||||||||||| |||| |||||| |||||||||||||| | ||||| |||| ||||||||| | |||||||| |||||||| |||| ||| || |
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| T |
29322533 |
ccggatataaacccaccactgcgcaatcacttggaagaaataatgaacaagagaaggcgcatcgaacacaaccaagataaatcactcatccacggcctcc |
29322434 |
T |
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| Q |
150 |
aacttcaacaacacg |
164 |
Q |
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|||||||| |||||| |
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| T |
29322433 |
aacttcaagaacacg |
29322419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 524
Target Start/End: Complemental strand, 29322142 - 29322059
Alignment:
| Q |
441 |
attcgcttaaggcggaatctgaagagattctgtttctttcgctatgcgaagcgattggtttacttgctgataggttttaccggt |
524 |
Q |
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||||||| |||| ||||||||||| |||||||||| ||||||||||||| ||| |||||| | ||||| ||||| ||||||| |
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| T |
29322142 |
attcgctcaaggtagaatctgaagaaattctgtttccttcgctatgcgaaatgatgggtttattcgctgacaggttgtaccggt |
29322059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 29296069 - 29296005
Alignment:
| Q |
255 |
ttttcaaatcattcgcacatcattaccctaacgcattcgctttgaaacttgcaaagcttctagaa |
319 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||| || || || || ||||||||| |
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| T |
29296069 |
ttttcaaatccctcgctcatcattaccctaacgcattcgctttcaagctcgcgaaacttctagaa |
29296005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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