View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16943_high_13 (Length: 571)

Name: NF16943_high_13
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16943_high_13
NF16943_high_13
[»] chr2 (14 HSPs)
chr2 (47-159)||(14489845-14489957)
chr2 (481-554)||(14490179-14490252)
chr2 (46-161)||(40446382-40446494)
chr2 (284-332)||(14490071-14490119)
chr2 (1-45)||(5614375-5614419)
chr2 (1-45)||(27641351-27641395)
chr2 (1-45)||(30522775-30522819)
chr2 (1-45)||(34580289-34580333)
chr2 (336-387)||(16131971-16132022)
chr2 (1-45)||(32597681-32597725)
chr2 (1-42)||(15805595-15805636)
chr2 (336-372)||(14490142-14490178)
chr2 (121-159)||(16132208-16132246)
chr2 (285-325)||(16132050-16132090)
[»] chr6 (3 HSPs)
chr6 (284-453)||(10752375-10752564)
chr6 (72-161)||(10752680-10752769)
chr6 (9-45)||(24765533-24765569)
[»] scaffold0413 (3 HSPs)
scaffold0413 (336-449)||(8042-8155)
scaffold0413 (72-161)||(7764-7851)
scaffold0413 (284-335)||(7966-8017)
[»] chr1 (18 HSPs)
chr1 (46-161)||(21265846-21265958)
chr1 (46-161)||(337006-337117)
chr1 (1-47)||(25473662-25473708)
chr1 (1-45)||(3656828-3656872)
chr1 (1-45)||(14236704-14236748)
chr1 (1-45)||(21620367-21620411)
chr1 (1-45)||(45360498-45360542)
chr1 (1-44)||(19565491-19565534)
chr1 (1-46)||(5555520-5555565)
chr1 (110-159)||(37668426-37668475)
chr1 (284-335)||(21265534-21265585)
chr1 (1-45)||(6693872-6693916)
chr1 (1-45)||(3028052-3028096)
chr1 (1-41)||(4643897-4643937)
chr1 (1-45)||(16296588-16296632)
chr1 (1-45)||(32550219-32550263)
chr1 (1-45)||(40125739-40125783)
chr1 (1-42)||(43068868-43068909)
[»] chr7 (15 HSPs)
chr7 (72-161)||(10290295-10290382)
chr7 (426-554)||(9742098-9742226)
chr7 (1-45)||(49141796-49141840)
chr7 (1-45)||(20372277-20372321)
chr7 (1-45)||(30586372-30586416)
chr7 (284-335)||(10290124-10290175)
chr7 (1-46)||(44080163-44080208)
chr7 (1-42)||(47266575-47266616)
chr7 (1-42)||(22916519-22916560)
chr7 (46-91)||(29586608-29586653)
chr7 (1-42)||(31578053-31578094)
chr7 (1-41)||(41743432-41743472)
chr7 (1-48)||(27619926-27619973)
chr7 (57-91)||(9992235-9992269)
chr7 (1-46)||(31293334-31293379)
[»] chr4 (14 HSPs)
chr4 (426-554)||(31519639-31519767)
chr4 (1-45)||(29051794-29051838)
chr4 (1-45)||(39502916-39502960)
chr4 (1-44)||(127794-127837)
chr4 (1-45)||(9033797-9033841)
chr4 (1-45)||(26696153-26696197)
chr4 (1-43)||(24072702-24072744)
chr4 (7-45)||(56080930-56080968)
chr4 (1-46)||(44506442-44506487)
chr4 (1-45)||(22602427-22602471)
chr4 (7-45)||(40590898-40590936)
chr4 (1-38)||(31334902-31334939)
chr4 (1-45)||(37995775-37995819)
chr4 (9-42)||(45620168-45620201)
[»] chr5 (11 HSPs)
chr5 (1-46)||(22213593-22213638)
chr5 (1-45)||(25897757-25897801)
chr5 (1-45)||(26674367-26674411)
chr5 (1-45)||(26945973-26946017)
chr5 (1-45)||(30493731-30493775)
chr5 (1-45)||(30534074-30534118)
chr5 (1-46)||(42393865-42393910)
chr5 (1-45)||(13946215-13946259)
chr5 (1-47)||(28612021-28612067)
chr5 (1-41)||(36275826-36275866)
chr5 (62-117)||(42859744-42859797)
[»] scaffold0051 (1 HSPs)
scaffold0051 (1-45)||(59330-59374)
[»] chr8 (15 HSPs)
chr8 (336-436)||(21232586-21232680)
chr8 (1-47)||(41486795-41486841)
chr8 (1-46)||(9686655-9686700)
chr8 (1-45)||(2735162-2735206)
chr8 (1-45)||(11661140-11661184)
chr8 (1-45)||(18915981-18916025)
chr8 (1-45)||(38566997-38567041)
chr8 (46-86)||(40842682-40842722)
chr8 (46-91)||(41959507-41959552)
chr8 (1-45)||(1197389-1197433)
chr8 (1-45)||(35563584-35563628)
chr8 (1-47)||(38526808-38526854)
chr8 (4-45)||(2001636-2001677)
chr8 (1-45)||(24697856-24697900)
chr8 (109-159)||(21232866-21232917)
[»] chr3 (15 HSPs)
chr3 (1-45)||(8082182-8082226)
chr3 (1-45)||(24373380-24373424)
chr3 (1-45)||(45572967-45573011)
chr3 (1-45)||(53151373-53151417)
chr3 (1-43)||(18996898-18996940)
chr3 (1-43)||(18999437-18999479)
chr3 (1-42)||(41958303-41958344)
chr3 (46-159)||(46405487-46405601)
chr3 (1-42)||(28246708-28246749)
chr3 (1-45)||(3777583-3777627)
chr3 (1-45)||(11685582-11685626)
chr3 (1-45)||(30261001-30261045)
chr3 (1-44)||(30800857-30800900)
chr3 (13-42)||(20329617-20329646)
chr3 (1-45)||(37608934-37608978)
[»] scaffold0618 (1 HSPs)
scaffold0618 (46-159)||(5188-5303)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 47 - 159
Target Start/End: Original strand, 14489845 - 14489957
Alignment:
Q  47 tggttaattaattagaattttattccatctattttattttaattactcaattaggtgtgtaacaaaaataggataattatttcttaaattatttatactt 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14489845 tggttaattaattagaattttattccatctattttattttaattactcaattaggtgtgtaacaaaaataggataattatttcttaaattatttatattt 14489944  T
Q  147 attctaataaaat 159  Q
    |||||||||||||    
T  14489945 attctaataaaat 14489957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 481 - 554
Target Start/End: Original strand, 14490179 - 14490252
Alignment:
Q  481 tttcttccggttagctaaaccatgcttttccaaactttaacatctcattattactgttaatcctctgatattca 554  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  14490179 tttctttcggttagctaaaccatgcttttccaaaccttaacatctcattattactattaatcctctgatattca 14490252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 40446382 - 40446494
Alignment:
Q  46 ttggttaattaattagaattttattccatctattttattttaattactcaattaggtgtgtaacaaaaataggataattatttcttaaattatttatact 145  Q
    |||||| ||||||| |||| | ||| ||||||||| ||||| |||| |||||| |||||| ||  ||||||||||||||||||||||||||||||||| |    
T  40446382 ttggtttattaatt-gaatctgatttcatctatttcatttttattaatcaatttggtgtgaaa--aaaataggataattatttcttaaattatttatatt 40446478  T
Q  146 tattctaataaaatcc 161  Q
    ||||||||||||||||    
T  40446479 tattctaataaaatcc 40446494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 14490071 - 14490119
Alignment:
Q  284 ccttgcctaattgatgccactaccaccatattttcttctccccttatgc 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14490071 ccttgcctaattgatgccactaccaccatattttcttctccccttatgc 14490119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5614419 - 5614375
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5614419 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 5614375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27641351 - 27641395
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27641351 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 27641395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30522775 - 30522819
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30522775 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 30522819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34580289 - 34580333
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34580289 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 34580333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 16132022 - 16131971
Alignment:
Q  336 aggtcaatgaaattggttatttggttcctaaaaactaggcacatattagcta 387  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  16132022 aggtcaatgaagttgattatttggttcctaaaaactaggcacatattagcta 16131971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32597681 - 32597725
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  32597681 atgtattcccggaaatgtcattcttaaccttgaaacaaacacccc 32597725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 15805636 - 15805595
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacac 42  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  15805636 atgtattcccggaaatgtcattcttaaccttgaaacaaacac 15805595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 14490142 - 14490178
Alignment:
Q  336 aggtcaatgaaattggttatttggttcctaaaaacta 372  Q
    |||||||||||||||||||||||||||||||||||||    
T  14490142 aggtcaatgaaattggttatttggttcctaaaaacta 14490178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 16132246 - 16132208
Alignment:
Q  121 aattatttcttaaattatttatacttattctaataaaat 159  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  16132246 aattaattcttaaattatttatatttattctaataaaat 16132208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 16132090 - 16132050
Alignment:
Q  285 cttgcctaattgatgccactaccaccatattttcttctccc 325  Q
    |||||||| |||||||||||||| |||||||| ||||||||    
T  16132090 cttgcctagttgatgccactaccgccatatttccttctccc 16132050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 284 - 453
Target Start/End: Complemental strand, 10752564 - 10752375
Alignment:
Q  284 ccttgcctaattgatgccactaccaccatattttcttctccccttatgccac-------------------aggtcaatgaaattggttatttggttcct 364  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||                   |||||||||||||||||||||||||||||    
T  10752564 ccttgcctaattgatgccactaccaccatatttttctctccccttatgccactatggttccgtgaattgctaggtcaatgaaattggttatttggttcct 10752465  T
Q  365 aaaaactaggcacatattagctactctacatatttcaattccctcacactcagttgg-ctttctcactcattcaattacacgagccattc 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||    
T  10752464 aaaaactaggcacatattagctactctacatatttcaattccctcaccctcagttggtttttctcactcattcaattacacgagccattc 10752375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 10752769 - 10752680
Alignment:
Q  72 catctattttattttaattactcaattaggtgtgtaacaaaaataggataattatttcttaaattatttatacttattctaataaaatcc 161  Q
    ||||||||| ||||| |||| |||||| ||||||  | |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10752769 catctatttcatttttattaatcaatttggtgtgacaaaaaaataggataattatttcttaaattatttatatttattctaataaaatcc 10752680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 24765533 - 24765569
Alignment:
Q  9 ccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||| ||||||||||||||||||||||||||||    
T  24765533 ccgggaatatcattcttaaccttgaaacaaacacccc 24765569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 336 - 449
Target Start/End: Original strand, 8042 - 8155
Alignment:
Q  336 aggtcaatgaaattggttatttggttcctaaaaactaggcacatattagctactctacatatttcaattccctcacactcagttggctttctcactcatt 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| |||||||||||||    
T  8042 aggtcaatgaaattggttatttggttcctaaaaactaggcacatattagctaccctacatatttcaattccctcaccctcaattggttttctcactcatt 8141  T
Q  436 caattacacgagcc 449  Q
    ||||||||||||||    
T  8142 caattacacgagcc 8155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 7764 - 7851
Alignment:
Q  72 catctattttattttaattactcaattaggtgtgtaacaaaaataggataattatttcttaaattatttatacttattctaataaaatcc 161  Q
    ||||||||| ||||| |||| |||||| ||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7764 catctatttcatttttattaatcaatttggtgtg--acaaaaataggataattatttcttaaattatttatatttattctaataaaatcc 7851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 7966 - 8017
Alignment:
Q  284 ccttgcctaattgatgccactaccaccatattttcttctccccttatgccac 335  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  7966 ccttgcctaattgatgccactaccaccatatttttctctccccttatgccac 8017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 21265958 - 21265846
Alignment:
Q  46 ttggttaattaattagaattttattccatctattttattttaattactcaattaggtgtgtaacaaaaataggataattatttcttaaattatttatact 145  Q
    |||||| ||||||| |||||| ||| ||||||||| ||||| |||| |||||| ||||||  |||||||||||||||||||||||||||||||||||| |    
T  21265958 ttggtttattaatt-gaatttgatttcatctatttcatttttattaatcaatttggtgtg--acaaaaataggataattatttcttaaattatttatatt 21265862  T
Q  146 tattctaataaaatcc 161  Q
    ||||||||||||||||    
T  21265861 tattctaataaaatcc 21265846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 337006 - 337117
Alignment:
Q  46 ttggttaattaattagaattttattccatctattttattttaattactcaattaggtgtgtaacaaaaataggataattatttcttaaattatttatact 145  Q
    |||||| ||||||| |||| | ||| ||||||||| ||||| |||| |||||| |||||| ||   |||||||||||||||||||||||||||||||| |    
T  337006 ttggtttattaatt-gaatctgatttcatctatttcatttttattaatcaatttggtgtgaaa---aaataggataattatttcttaaattatttatatt 337101  T
Q  146 tattctaataaaatcc 161  Q
    ||||||||||||||||    
T  337102 tattctaataaaatcc 337117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25473708 - 25473662
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccctt 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25473708 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccctt 25473662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3656828 - 3656872
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  3656828 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 3656872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14236704 - 14236748
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14236704 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 14236748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21620367 - 21620411
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  21620367 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 21620411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45360498 - 45360542
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  45360498 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45360542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 19565491 - 19565534
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacaccc 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19565491 atgtattcccgggaatgtcattcttaaccttgaaacaaacaccc 19565534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5555520 - 5555565
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccct 46  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  5555520 atgtattcctgggaatgtcattcttaaccttgaaacaaacacccct 5555565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 37668475 - 37668426
Alignment:
Q  110 aaaaataggataattatttcttaaattatttatacttattctaataaaat 159  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  37668475 aaaagtaggataattatttcttaaattatttatatttattctaataaaat 37668426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 21265585 - 21265534
Alignment:
Q  284 ccttgcctaattgatgccactaccaccatattttcttctccccttatgccac 335  Q
    |||||| |||||||||||||||||||||||||||  ||||||||||||||||    
T  21265585 ccttgcataattgatgccactaccaccatatttttatctccccttatgccac 21265534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6693916 - 6693872
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  6693916 atgtattcgtgggaatgtcattcttaaccttgaaacaaacacccc 6693872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3028052 - 3028096
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||||    
T  3028052 atgtattcccgagaatatcattctcaaccttgaaacaaacacccc 3028096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4643897 - 4643937
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaaca 41  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  4643897 atgtattcccgaaaatgtcattcttaaccttgaaacaaaca 4643937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16296632 - 16296588
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||||    
T  16296632 atgtattcccgagaatgtcatacttaaacttgaaacaaacacccc 16296588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32550263 - 32550219
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    ||||||| || |||||||||||||||||||| |||||||||||||    
T  32550263 atgtatttccaggaatgtcattcttaacctttaaacaaacacccc 32550219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40125739 - 40125783
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||| | |||||||||||||||||||||| |||||||||    
T  40125739 atgtattcccagaaatgtcattcttaaccttgaaataaacacccc 40125783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43068909 - 43068868
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacac 42  Q
    ||||||| |||  |||||||||||||||||||||||||||||    
T  43068909 atgtatttccgataatgtcattcttaaccttgaaacaaacac 43068868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 10290382 - 10290295
Alignment:
Q  72 catctattttattttaattactcaattaggtgtgtaacaaaaataggataattatttcttaaattatttatacttattctaataaaatcc 161  Q
    ||||||||| ||||| |||| |||||| ||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10290382 catctatttcatttttattaatcaatttggtgtg--acaaaaataggataattatttcttaaattatttatatttattctaataaaatcc 10290295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 426 - 554
Target Start/End: Original strand, 9742098 - 9742226
Alignment:
Q  426 ctcactcattcaattacacgagccattccactcctctctaattccttgcgtcca-ttttcttccggttagctaaaccatgcttttccaaactttaacatc 524  Q
    ||||||| ||||||||||||||||| | || |||||||||||||||||| |||| |||||||| |||||| |||||| | |||||||||||  ||||||     
T  9742098 ctcactcgttcaattacacgagccactgcaatcctctctaattccttgcatccatttttcttctggttagataaacctttcttttccaaac-ctaacatt 9742196  T
Q  525 tcattattactgttaatcctctgatattca 554  Q
     ||||||||||  ||||||||| |||||||    
T  9742197 ccattattactactaatcctcttatattca 9742226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 49141840 - 49141796
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  49141840 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 49141796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20372321 - 20372277
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  20372321 atgtattcccgggaaagtcattcttaaccttgaaacaaacacccc 20372277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30586372 - 30586416
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  30586372 atgtattcccggaaatgtcattcttaaccttgaaacaaacacccc 30586416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 10290175 - 10290124
Alignment:
Q  284 ccttgcctaattgatgccactaccaccatattttcttctccccttatgccac 335  Q
    |||||| |||||||||||||||||||||||||||  ||||||||||||||||    
T  10290175 ccttgcataattgatgccactaccaccatatttttctctccccttatgccac 10290124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 44080163 - 44080208
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccct 46  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||    
T  44080163 atgtattcccgggaatgtcattcttaaccttaaaagaaacacccct 44080208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 47266575 - 47266616
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacac 42  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  47266575 atgtattcccgggaatgtcattcttaacctcgaaacaaacac 47266616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 22916560 - 22916519
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacac 42  Q
    |||||||||| | |||||||||||||||||||||||||||||    
T  22916560 atgtattcccagaaatgtcattcttaaccttgaaacaaacac 22916519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 29586608 - 29586653
Alignment:
Q  46 ttggttaattaattagaattttattccatctattttattttaatta 91  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||||    
T  29586608 ttggttaattaatttgaattttattccatctattttacttttatta 29586653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31578053 - 31578094
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacac 42  Q
    ||||||| ||| ||||||||||||||||||||||||||||||    
T  31578053 atgtatttccgagaatgtcattcttaaccttgaaacaaacac 31578094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41743432 - 41743472
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaaca 41  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  41743432 atgtattctcggaaatgtcattcttaaccttgaaacaaaca 41743472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27619973 - 27619926
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacaccccttg 48  Q
    |||||||||  | ||||||||| |||||||||||||||||||||||||    
T  27619973 atgtattcctagaaatgtcatttttaaccttgaaacaaacaccccttg 27619926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 9992235 - 9992269
Alignment:
Q  57 attagaattttattccatctattttattttaatta 91  Q
    |||||||||||||||||||||||||||||| ||||    
T  9992235 attagaattttattccatctattttatttttatta 9992269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31293334 - 31293379
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccct 46  Q
    ||||||| |||  |||||||||||||||||| ||||||||||||||    
T  31293334 atgtatttccgaaaatgtcattcttaaccttaaaacaaacacccct 31293379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 426 - 554
Target Start/End: Complemental strand, 31519767 - 31519639
Alignment:
Q  426 ctcactcattcaattacacgagccattccactcctctctaattccttgcgtccatt-ttcttccggttagctaaaccatgcttttccaaactttaacatc 524  Q
    ||||||| ||||||||||||||||| | || |||||||||||||||||| |||||| |||||| |||||| |||||| | ||||||||||   ||||||     
T  31519767 ctcactcgttcaattacacgagccactgcaatcctctctaattccttgcatccattcttcttctggttagataaacctttcttttccaaa-actaacatt 31519669  T
Q  525 tcattattactgttaatcctctgatattca 554  Q
     ||||||||||  ||||||||| |||||||    
T  31519668 ccattattactactaatcctcttatattca 31519639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29051838 - 29051794
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29051838 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 29051794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39502916 - 39502960
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  39502916 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 39502960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 127837 - 127794
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacaccc 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  127837 atgtattcccgggaatgtcattcttaaccttgaaacaaacaccc 127794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9033841 - 9033797
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  9033841 atgtattcctgggaatgtcattcttaaccttgaaacaaacacccc 9033797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26696153 - 26696197
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  26696153 atgtattcccgggaatatcattcttaaccttgaaacaaacacccc 26696197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24072702 - 24072744
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacc 43  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  24072702 atgtattcccgggaatatcattcttaaccttgaaacaaacacc 24072744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 56080930 - 56080968
Alignment:
Q  7 tcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||    
T  56080930 tcccgggaatgtcattcttaaccttgaaacaaacacccc 56080968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 44506442 - 44506487
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccct 46  Q
    |||||||||||  |||||||||||||||||||||||||||||||||    
T  44506442 atgtattcccgaaaatgtcattcttaaccttgaaacaaacacccct 44506487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22602427 - 22602471
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||    
T  22602427 atgtattcctgggaatgtcattcttaaacttgaaacaaacacccc 22602471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 40590936 - 40590898
Alignment:
Q  7 tcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  40590936 tcccgggaatgtcattcttaaccttgaaacaaatacccc 40590898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31334939 - 31334902
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaa 38  Q
    |||||||| |||||||||||||||||||||||||||||    
T  31334939 atgtattctcgggaatgtcattcttaaccttgaaacaa 31334902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37995775 - 37995819
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||    
T  37995775 atgtattcatgggaatatcattcttaaccttgaaacaaacacccc 37995819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 45620201 - 45620168
Alignment:
Q  9 ccgggaatgtcattcttaaccttgaaacaaacac 42  Q
    ||||||||||| ||||||||||||||||||||||    
T  45620201 ccgggaatgtcgttcttaaccttgaaacaaacac 45620168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 22213593 - 22213638
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccct 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  22213593 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccct 22213638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25897801 - 25897757
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25897801 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 25897757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26674367 - 26674411
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26674367 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 26674411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26945973 - 26946017
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26945973 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 26946017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30493775 - 30493731
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30493775 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 30493731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30534118 - 30534074
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30534118 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 30534074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 42393910 - 42393865
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccct 46  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  42393910 atgtattctcgggaatgtcattcttaaccttgaaacaaacacccct 42393865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13946259 - 13946215
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  13946259 atgtattctcgggaatgtcattcttaaccttgaaacaaacacccc 13946215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28612021 - 28612067
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccctt 47  Q
    |||||||| ||  ||||||||| ||||||||||||||||||||||||    
T  28612021 atgtattctcgaaaatgtcatttttaaccttgaaacaaacacccctt 28612067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36275826 - 36275866
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaaca 41  Q
    ||||||| | || ||||||||||||||||||||||||||||    
T  36275826 atgtatttcaggaaatgtcattcttaaccttgaaacaaaca 36275866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 42859744 - 42859797
Alignment:
Q  62 aattttattccatctattttattttaattactcaattaggtgtgtaacaaaaatag 117  Q
    ||||||||| ||||||||||||||| |||| |||||| ||||||  ||||||||||    
T  42859744 aattttatttcatctattttatttttattaatcaatttggtgtg--acaaaaatag 42859797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 59330 - 59374
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  59330 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 59374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 436
Target Start/End: Complemental strand, 21232680 - 21232586
Alignment:
Q  336 aggtcaatgaaattggttatttggttcctaaaaactaggcacatattagctactctacatatttcaattccctcacactcagttggctttctcactcatt 435  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||     |||  ||||||||||| |||||| || ||||| |||||||||||||    
T  21232680 aggtcaatgaagttagttatttggttcctaaaaactaggcacatattag-----ctatgtatttcaattcactcacaatcggttgg-tttctcactcatt 21232587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41486795 - 41486841
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccctt 47  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  41486795 atgtattcccgggaatgtcattcttaaccttgaaacaaatacccctt 41486841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9686655 - 9686700
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccct 46  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  9686655 atgtatttccgggaatgtcattcttaaccttgaaacaaacacccct 9686700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2735162 - 2735206
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  2735162 atgtattcctgggaatgtcattcttaaccttgaaacaaacacccc 2735206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11661184 - 11661140
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  11661184 atgtatttccgggaatgtcattcttaaccttgaaacaaacacccc 11661140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18916025 - 18915981
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  18916025 atgtattcccggaaatgtcattcttaaccttgaaacaaacacccc 18915981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38567041 - 38566997
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  38567041 atgtatttccgggaatgtcattcttaaccttgaaacaaacacccc 38566997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 40842722 - 40842682
Alignment:
Q  46 ttggttaattaattagaattttattccatctattttatttt 86  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40842722 ttggttaattaattagaattttattccatctattttatttt 40842682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 41959552 - 41959507
Alignment:
Q  46 ttggttaattaattagaattttattccatctattttattttaatta 91  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  41959552 ttggttaattaattagaatcttattccatctattttatttttatta 41959507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1197433 - 1197389
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||| |||||||||||||| |||||||||||||||||||    
T  1197433 atgtattcccaggaatgtcattcttcaccttgaaacaaacacccc 1197389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35563628 - 35563584
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||    
T  35563628 atgtattcccggaaatatcattcttaaccttgaaacaaacacccc 35563584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38526808 - 38526854
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccctt 47  Q
    |||||||||  | ||||||||||||||||||||||||||||||||||    
T  38526808 atgtattccgagaaatgtcattcttaaccttgaaacaaacacccctt 38526854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 2001636 - 2001677
Alignment:
Q  4 tattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||| ||||||||||||||||||||||| |||||||||    
T  2001636 tattcccgcgaatgtcattcttaaccttgaaataaacacccc 2001677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24697856 - 24697900
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||| | |||||||||||||||||||||||||| |||||    
T  24697856 atgtattcccagaaatgtcattcttaaccttgaaacaaatacccc 24697900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 21232917 - 21232866
Alignment:
Q  109 caaaaataggataattatttcttaaattatttata-cttattctaataaaat 159  Q
    ||||| |||||||||||||||||| ||||||||||  |||||||||||||||    
T  21232917 caaaagtaggataattatttcttagattatttatattttattctaataaaat 21232866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8082226 - 8082182
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8082226 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 8082182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24373380 - 24373424
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24373380 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 24373424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45572967 - 45573011
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  45572967 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45573011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 53151417 - 53151373
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  53151417 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 53151373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18996898 - 18996940
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacc 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18996898 atgtattcccgggaatgtcattcttaaccttgaaacaaacacc 18996940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18999437 - 18999479
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacc 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18999437 atgtattcccgggaatgtcattcttaaccttgaaacaaacacc 18999479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41958303 - 41958344
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacac 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41958303 atgtattcccgggaatgtcattcttaaccttgaaacaaacac 41958344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 46405601 - 46405487
Alignment:
Q  46 ttggttaattaattagaattttattccatctattttattttaattactcaattaggtgtgtaacaaaaa--taggataattatttcttaaattatttata 143  Q
    |||||| ||||||| |||| | ||| ||||||||| ||||| |||| |||||| ||| || || |||||  |||||||||||||||||| ||||||||||    
T  46405601 ttggtttattaatt-gaatctgatttcatctatttcatttttattaatcaatttggtatgaaaaaaaaaagtaggataattatttcttagattatttata 46405503  T
Q  144 cttattctaataaaat 159  Q
     ||||| |||||||||    
T  46405502 tttattttaataaaat 46405487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28246749 - 28246708
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacac 42  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  28246749 atgtattcccggaaatgtcattcttaaccttgaaacaaacac 28246708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3777583 - 3777627
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||    
T  3777583 atgtattctcggaaatgtcattcttaaccttgaaacaaacacccc 3777627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11685626 - 11685582
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||  ||||||||||||||||||||||||||||||||    
T  11685626 atgtattcccgataatgtcattcttaaccttgaaacaaacacccc 11685582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30261001 - 30261045
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    ||||||| || ||||||||||||||||||||||||||||||||||    
T  30261001 atgtatttccaggaatgtcattcttaaccttgaaacaaacacccc 30261045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30800900 - 30800857
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacaccc 44  Q
    |||||||||||  |||||||||||||||||||||||||||||||    
T  30800900 atgtattcccgaaaatgtcattcttaaccttgaaacaaacaccc 30800857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 20329617 - 20329646
Alignment:
Q  13 gaatgtcattcttaaccttgaaacaaacac 42  Q
    ||||||||||||||||||||||||||||||    
T  20329617 gaatgtcattcttaaccttgaaacaaacac 20329646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37608978 - 37608934
Alignment:
Q  1 atgtattcccgggaatgtcattcttaaccttgaaacaaacacccc 45  Q
    |||||||||||| ||| || |||||||| ||||||||||||||||    
T  37608978 atgtattcccggaaatatcgttcttaacattgaaacaaacacccc 37608934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 5188 - 5303
Alignment:
Q  46 ttggttaattaattagaattttattccatctattttattttaattactcaattaggtgtgtaacaaaaa---taggataattatttcttaaattatttat 142  Q
    |||||| ||||||| |||| | ||| ||||||||| ||||| |||| |||||| ||| |  || |||||   |||||||||||||||||| |||||||||    
T  5188 ttggtttattaatt-gaatctgatttcatctatttcatttttattaatcaatttggtatagaaaaaaaaaagtaggataattatttcttagattatttat 5286  T
Q  143 acttattctaataaaat 159  Q
    | ||||| |||||||||    
T  5287 atttattttaataaaat 5303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University