View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16943_high_16 (Length: 499)
Name: NF16943_high_16
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 37557935 - 37557486
Alignment:
| Q |
18 |
ctccatccatcactcaagacctataaagaaatgaacataaaacaggctaaattatgagtaacttgtttcatgaatagcaacatgtcatggagtttatcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37557935 |
ctccatccatcactcaagacctataaagaaatgaacataaaacaggctaaattatgagtaacttgtttcatgaatagcaacatgtcatggagtttatcaa |
37557836 |
T |
|
| Q |
118 |
tcacagattctttttgattttgcagagaacatattagattagatttgaagccagaatgaattacctgctgaacaagttcctgggcacaacttttggcttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37557835 |
tcacagattctttttgattttgcagagaacatattagattagatttgaagccagaatgaattacctgctgaacaagttcctgggcacaacttttggcttc |
37557736 |
T |
|
| Q |
218 |
ttctggttgctccgaatttctcatctcaagacatgtgaaattcaagatagcattatgtcgagcaaacatccttgctacgggacggtatccatctctatca |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37557735 |
ttctggttgctccgaatttctcatctcaagacatgtgaaattcaagatagcattatgtcgagcgaacatccttgctacgggacggtatccatctctatca |
37557636 |
T |
|
| Q |
318 |
cttaagttgtaatatcctgaagtaagctctgcagcatggctttcagttttataccaccagtggattccagcaatctgtttttaatgaatctttcagctta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37557635 |
cttaagttgtaatatcctgaagtaagctctgcagcatggctttcagttttataccaccagtggattccagcaatctgtttttaatgaatctttcagctta |
37557536 |
T |
|
| Q |
418 |
ttgacgtgaaaatattgaattgctaatttaccatatattgaaagaaatga |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37557535 |
ttgacgtgaaaatattgaattgctaatttaccatatattgaaagaaatga |
37557486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University