View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_high_29 (Length: 393)
Name: NF16943_high_29
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 377
Target Start/End: Original strand, 33646312 - 33646679
Alignment:
| Q |
9 |
agcacagagttgtaactaaatagtttaattggaatatagctaatttttattttagtttcgaaaaaataaaacagattgtttgtcctnnnnnnnntaaatt |
108 |
Q |
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| T |
33646312 |
agcacaaagttgtaactaaatagtttaattggaatatagctaatttttattttagtttcgaaaaaataaaacagattgtttgtcctaaaaaa---aaaat |
33646408 |
T |
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| Q |
109 |
cattttcannnnnnngt--ctctaaagacataattttgacatatcttcttgagtaacatggacatccatgggt-ggacacagtagatggatataacttag |
205 |
Q |
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| T |
33646409 |
cattttcatttttttttgcctctaaagacataattttgacatatcttcttgagtaacatggacatccatgggttggacacaatagatggacataacttag |
33646508 |
T |
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| Q |
206 |
acacgttttaaatataaatatcacaaccgtacactaatacaaacataaaatgatgatcactcgagatcaaaaacgaaatcgaannnnnnnngaaggatgg |
305 |
Q |
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| T |
33646509 |
acacgttttaaatataaatgtcataactttacactaatacaaacataaaaagatgatcactcgatatcaaaaacgaaatcgaattttttt--aaggatgg |
33646606 |
T |
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| Q |
306 |
aaacattatgttttattttcta-gccctattatttttaagagacgaaaaatagtttaacacttaggttgtgac |
377 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33646607 |
aaacattatgttttattttctaggctctattatttttaagagacgaaaaatagtttaacacttaggttgtgac |
33646679 |
T |
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