View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16943_high_30 (Length: 390)
Name: NF16943_high_30
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_high_30 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 8031123 - 8031504
Alignment:
| Q |
1 |
tcaatccccccaacttctatacattccctcatttcttctcttgtttacacaattaagggaaatgtatatccagatgggtatgttaatatcacaattcctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8031123 |
tcaatccccccaacttctatacattccctcatttcttctcttgtttacacaattaagggaaatgtatatccagatgggtatgttaatatcacaattcctc |
8031222 |
T |
|
| Q |
101 |
tcttttcttcatcaataattgtttttgcaatataattcagggacannnnnnncttctaatatcaatatgacaatatcagtattaatgcaaccagttaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8031223 |
tcttttcttcatcaataattgtttttgcaatataattcagggacatttttttcttctaatatcaat--------atcagtattaatgcaaccagttaata |
8031314 |
T |
|
| Q |
201 |
ctgatatttcataatcatctacgcatgtatcaaattatatcattttcaatgggtgacctaacattgactttttgaattttttattctagtttataaatta |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8031315 |
ctgatatttcataatcatcttcgcatgtatcaaattatatcattttcaatgggtgacctaacattgactttttgaattttttattctagtttataaatta |
8031414 |
T |
|
| Q |
301 |
tagattacaatagtttattgagttataatttatatgtatgtatgtatgctcctctgatgtaggttatacaccgtgtccatcaacattggc |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8031415 |
tagattacaatagtttattgagttataatttatatgtatgtatgcatgctcctctgatgtaggttatacaccgtgtccatcaacattggc |
8031504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 8021065 - 8021209
Alignment:
| Q |
1 |
tcaatccccccaacttctatacattccctcatttcttctcttgtttacacaattaagggaaatgtatatccagatgggtatgttaatatcacaattcctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
8021065 |
tcaatccccccaacttctatacattccctcatttcttctcttgtttacacaattaagggaaatgtatatccagatgggtacgttaatatcacaaatcctt |
8021164 |
T |
|
| Q |
101 |
tcttttcttcatcaataattgtttttgcaatataattcagggaca |
145 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8021165 |
tcttttcttcatcaataattgtttttgccatataattcagggaca |
8021209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 208 - 325
Target Start/End: Original strand, 8021301 - 8021423
Alignment:
| Q |
208 |
ttcataatcatctacgcatgtatcaaattatatcattttcaatgggtga-cctaacattgactttttgaattttttattctag----tttataaattata |
302 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
8021301 |
ttcataatcatcttcgtatgtatcaaattatatcattttcaatgggtgaccctaacattgactttttgagttttttcttctagtttatttataaattata |
8021400 |
T |
|
| Q |
303 |
gattacaatagtttattgagtta |
325 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
8021401 |
gattacaataggttattgagtta |
8021423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 309 - 390
Target Start/End: Original strand, 8021435 - 8021517
Alignment:
| Q |
309 |
aatagtttattgagttataatttatatgtatgtatgtatgctcctc-tgatgtaggttatacaccgtgtccatcaacattggc |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8021435 |
aatagtttattgagttataatttatatgtatgtacgtatgctcctcttgatgtaggatatacaccgtgtccatcaacattggc |
8021517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University