View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_high_32 (Length: 386)
Name: NF16943_high_32
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_high_32 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 8e-80; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 13079191 - 13079349
Alignment:
| Q |
9 |
aaatgaattcatcactctttctttttgcctcttgtcctttcaccttctttgctttctctatttcatgatcatttgcctctttttcttgcaaacattgttg |
108 |
Q |
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| T |
13079191 |
aaataaattcatcactctttctttttgcctcttgtcctttcaccttctttgctttctctatttcatgatcatttgcctctttttcttgcaaacattgttg |
13079290 |
T |
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| Q |
109 |
atctttaatcttcattgcaatcttaggttcttcactttctcccttcacaaatggtacaa |
167 |
Q |
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| T |
13079291 |
atctttaatcttcattgcactcttaggttcttcactttctcccttcacaaatggtacaa |
13079349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 226 - 371
Target Start/End: Original strand, 13079408 - 13079553
Alignment:
| Q |
226 |
ctctgttgtatcaccttgtgagtctaacattttcattggaaaatcttcttttgatctatctttactcatcttttcttgcaaataacaatcatctttttcc |
325 |
Q |
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| T |
13079408 |
ctctgttgtatcaccttgtgagtctaacattttcattggaaaatcttcttttgatctatctttactcatcttttcttgcaaataacaatcatctttttcc |
13079507 |
T |
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| Q |
326 |
tttgttatgtttttcttgaaaccttcatctacttcattttgtatct |
371 |
Q |
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| T |
13079508 |
tttgttatgtttttcttgaaaccttcatctacttcattttgtatct |
13079553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 229 - 356
Target Start/End: Original strand, 13075207 - 13075334
Alignment:
| Q |
229 |
tgttgtatcaccttgtgagtctaacattttcattggaaaatcttcttttgatctatctttactcatcttttcttgcaaataacaatcatctttttccttt |
328 |
Q |
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| T |
13075207 |
tgttgtatcaccttatgagtctaacattttcattggaaaatcttcttttgatctatctttactcatcttttcttgcaaataacaatcatctttttccttt |
13075306 |
T |
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| Q |
329 |
gttatgtttttcttgaaaccttcatcta |
356 |
Q |
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| T |
13075307 |
gttatgtttttcttgaaaccttcatcta |
13075334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 13074987 - 13075145
Alignment:
| Q |
9 |
aaatgaattcatcactctttctttttgcctcttgtcctttcaccttctttgctttctctatttcatgatcatttgcctctttttcttgcaaacattgttg |
108 |
Q |
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|||| |||||||||| |||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
13074987 |
aaataaattcatcacaatttctttttgcctcttatcctttcaccttatttgcttactctatttcatgatcatttgactcattttcttgcaaacattgttg |
13075086 |
T |
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| Q |
109 |
atctttaatcttcattgcaatcttaggttcttcactttctcccttcacaaatggtacaa |
167 |
Q |
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| T |
13075087 |
atctttaatcttcattgaaatcttaggttcttaaatttctcccttcacaaatggtacaa |
13075145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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