View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_high_34 (Length: 381)
Name: NF16943_high_34
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 363
Target Start/End: Original strand, 43220231 - 43220584
Alignment:
| Q |
10 |
aagaatatgatcttttatgcactggtttcatctgtttgtcttcttcaagggaaatcatccccaagtgtgagggatcctccagcatcattttagaaaccag |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
43220231 |
aagaagatgatcttttatgcactggtttcatctgtttgtcttcttcaagggaaatcatccccaggtgtgagggatcctccagcatcatcttagaaaccag |
43220330 |
T |
|
| Q |
110 |
ataacctgcaatagaccatgtttggtattttcttgcttttctaccaacatatcttccaagcttaccatcataatattcaggccatccatcctccagcaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43220331 |
ataacctgcaatagaccatgtttggtattttcttgcttttctaccaacatatcttccaagcttaccatcataatattcaggccatccatcctccagcaaa |
43220430 |
T |
|
| Q |
210 |
cgactctcagcaagttcgattgcacgtcttgctatttgcggacgtcctgtcttgatgcaagcagctgttactagccacatgagcactgcactcaagagca |
309 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43220431 |
cgactctcagcaagttcaattgcacgtcttgctatttgcggacgtcctgtcttgatgcaagcagctgttactagccacatgagcactgcactcaagagca |
43220530 |
T |
|
| Q |
310 |
agaaacaaaatgagaagtaaggatatcggactatgcaattctattccaaagcat |
363 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
43220531 |
agaaacaaaatgagaagtacggatatcggtctatgcaattctattccaaagcat |
43220584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 327
Target Start/End: Original strand, 43229305 - 43229622
Alignment:
| Q |
10 |
aagaatatgatcttttatgcactggtttcatctgtttgtcttcttcaagggaaatcatccccaagtgtgagggatcctccagcatcattttagaaaccag |
109 |
Q |
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||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |||| |
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| T |
43229305 |
aagaagatgatcttttaatcactggtttcatctgcttgtcttcttcaagggaaatcatccccaagtgtgaggggtcctccagcatcatctttgccaccaa |
43229404 |
T |
|
| Q |
110 |
ataacctgcaatagaccatgtttggtattttcttgcttttctaccaacatatcttccaagcttaccatcataatattcaggccatccatcctccagcaaa |
209 |
Q |
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|||||| ||||||||||||||||||||||||||||| | | | ||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| |
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| T |
43229405 |
ataacccgcaatagaccatgtttggtattttcttgcctgtttcccaacatatcttccaagtttaccatcataatattcaggccatccatccttcagtaaa |
43229504 |
T |
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| Q |
210 |
cgactctcagcaagttcgattgcacgtcttgctatttgcggacgtcctgtcttgatgcaagcagctgttactagccacatgagcactgcactcaagagca |
309 |
Q |
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|||||||| |||||||| |||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||| |
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| T |
43229505 |
cgactctcggcaagttcaattgcacgtcttgctatttgtggtcgccctgtcttgatgcaagcagctgttacaagccacaggagtactgcgctcaagagca |
43229604 |
T |
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| Q |
310 |
agaaacaaaatgagaagt |
327 |
Q |
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|||||||||||| |||| |
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| T |
43229605 |
tgaaacaaaatgaaaagt |
43229622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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