View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_high_35 (Length: 375)
Name: NF16943_high_35
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 29933918 - 29934276
Alignment:
| Q |
1 |
ccagtagagtagaatgatttgtaacataagctattttgaagattaagtcactatcttcctttctaattcttttagttgaaactatgatcatatataattg |
100 |
Q |
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| T |
29933918 |
ccagtagagtagaatgatttgtaacataagttattttgaagattaagtcactatattcctttctaattcttttagttgaaactatgatcatata--attg |
29934015 |
T |
|
| Q |
101 |
atgttaattagtgttagactgtaaaggtaggtgtatagaaatttggtcatatttctttagtgtagaaaaattaaagagatagcaggat-tgcaccactac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29934016 |
atgttaattagtgttagactgtaaaggtaggtgtatagaaatttggtcatgtttctttagtgtagaaaaattaaagagatagcaggatctgcaccactac |
29934115 |
T |
|
| Q |
200 |
ggtatatagtgttc-tatgtcgacagttttatcgttttagtccaattgcgacgtttttccatttacatattttttggttcgacatgaattcttattttgt |
298 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29934116 |
ggtatatagtgttcctatgtcgacagttttatcgttttagtccaattgcgacgtttttccatttacatattttttggttcgacatgaattcttattttgt |
29934215 |
T |
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| Q |
299 |
gtactccttttatctattcaagaccctaggaaagcaatattgaagagatattagaagtatt |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29934216 |
gtactccttttatctattcaagaccctaggaaagcaatattgaagagatattagaagtatt |
29934276 |
T |
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