View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16943_high_36 (Length: 369)
Name: NF16943_high_36
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_high_36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 3 - 350
Target Start/End: Original strand, 10494019 - 10494368
Alignment:
| Q |
3 |
gtatgacacaaaatagaaataatagctcaactttgcttcactatcctagat-gtca-tagtggctttcttgctatctactataccgctatagcatttttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10494019 |
gtatgacacaaaatagaaataatagctcaactttgcttcactatcctagattgacaatagtggctttcttgctatctactataccgctatagcatttttg |
10494118 |
T |
|
| Q |
101 |
gggttcggcgctacatgccgcttgctatctaggattagcaacataatagtcatctataatgacctcaaatccattaatctaagtaagtttacctgatcta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10494119 |
gggttcggcgctacatgccgcttgctatctaggattaacaacataatagtcatctataatgacctcaaatccattaatctaagtaagtttacctgatcta |
10494218 |
T |
|
| Q |
201 |
caacttcccacggatctgctctcttatggtcaagattgttgatgaacacaagtcttggaagttgaaattccatcatttgcttatcaacagaaatggaatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10494219 |
caacttcccacggatctgctctcttatggtcaagattgttgatgaacacaagtcttggaagttgaaattccatcatttgcttatcaacagaaatggactg |
10494318 |
T |
|
| Q |
301 |
ggttttcactccaccaacactagaaagaacaagaactgcaccgtcaaagg |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10494319 |
ggttttcactccaccaacactagaaagaacaagaactgcaccgtcaaagg |
10494368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 258
Target Start/End: Original strand, 10489954 - 10490205
Alignment:
| Q |
10 |
acaaaatagaaataatagctcaactttgcttcactatcctagat-gtca-tagtggctttcttgctatctactataccgctatagcatttttggggttcg |
107 |
Q |
| |
|
|||||||||||| || ||||||||| |||| ||||||||||||| | || |||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10489954 |
acaaaatagaaacaacagctcaactctgctccactatcctagattgacaatagtggctttctcgctatctactataccgctatagcatttttgaagttcg |
10490053 |
T |
|
| Q |
108 |
gcgctacatgccgcttgctatctaggattagcaacataatagtcatctataatgacctcaaatccattaat-ctaagtaagtttacctgatctacaactt |
206 |
Q |
| |
|
|||||||| |||||||||||||| |||||| ||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||| || |||||||| |
|
|
| T |
10490054 |
gcgctacaggccgcttgctatctgggattaataacataataatcatctatgatgacctccaatccattaatcctaagtaagtttacccgaattacaactt |
10490153 |
T |
|
| Q |
207 |
cccacggatctgctctcttatggtcaagattgttgatgaacacaagtcttgg |
258 |
Q |
| |
|
|||||||| ||||| | |||| |||||| ||||||| || |||||||| |
|
|
| T |
10490154 |
gccacggatttgctcccggctggttaagatttctgatgaatacgagtcttgg |
10490205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 7477563 - 7477425
Alignment:
| Q |
1 |
acgtatgacacaaaatagaaataatagctcaactttgcttcactatcctagat-gtca-tagtggctttcttgctatctactataccgctatagcatttt |
98 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| | || |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7477563 |
acgtacgacacaaaatagaaacaatagctcaactttgctccactatcctagattgacaatagtggctttcttgctatctactataccgcaatagcatttt |
7477464 |
T |
|
| Q |
99 |
tggggttcggcgctacatgccgcttgctatctaggatta |
137 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7477463 |
tggggttcggcgctacatgccgtttgctatctaggatta |
7477425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 185 - 350
Target Start/End: Original strand, 10475884 - 10476049
Alignment:
| Q |
185 |
aagtttacctgatctacaacttcccacggatctgctctcttatggtcaagattgttgatgaacacaagtcttggaagttgaaattccatcatttgcttat |
284 |
Q |
| |
|
||||||||||||| || |||| |||| |||| ||||| ||||||||||||||||||||| || |||||||||||||||| | || |||||||||| |||| |
|
|
| T |
10475884 |
aagtttacctgatataaaactccccatggatttgctcccttatggtcaagattgttgataaaaacaagtcttggaagttcatatcccatcatttgtttat |
10475983 |
T |
|
| Q |
285 |
caacagaaatggaatgggttttcactccaccaacactagaaagaacaagaactgcaccgtcaaagg |
350 |
Q |
| |
|
||||||||||||| ||| | ||||| ||| |||||| |||||||||||||| ||||||||||||| |
|
|
| T |
10475984 |
caacagaaatggagtggctgttcaccccatcaacaccagaaagaacaagaatggcaccgtcaaagg |
10476049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 159 - 350
Target Start/End: Original strand, 10546735 - 10546923
Alignment:
| Q |
159 |
atgacctcaaatccattaatctaagtaagtttacctgatctacaacttcccacggatctgctctcttatggtcaagattgttgatgaacacaagtcttgg |
258 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| || ||| |||||||||||||||| ||| | |||||||||||||||| | ||||||||||| |
|
|
| T |
10546735 |
atgacctcaaatccattaatctaa---agttcacctgatttaaaacatcccacggatctgctcccttgttgtcaagattgttgatgtatacaagtcttgg |
10546831 |
T |
|
| Q |
259 |
aagttgaaattccatcatttgcttatcaacagaaatggaatgggttttcactccaccaacactagaaagaacaagaactgcaccgtcaaagg |
350 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||| || | |||| |||||||||||||| ||||||| ||| ||| | ||||||| |
|
|
| T |
10546832 |
aagttgatattttatcatttgcttatcaacagaaatggacaggctgttcatcccaccaacactagacagaacaaaaacggcagcatcaaagg |
10546923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 168 - 350
Target Start/End: Original strand, 10464589 - 10464771
Alignment:
| Q |
168 |
aatccattaatctaagtaagtttacctgatctacaacttcccacggatctgctctcttatggtcaagattgttgatgaacacaagtcttggaagttgaaa |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
10464589 |
aatccattaatctaagtaagtttacctgattcacaacttcccacggatttgctcccttctggtcaagattgttgatgaatacaagtcttggaagttgata |
10464688 |
T |
|
| Q |
268 |
ttccatcatttgcttatcaacagaaatggaatgggttttcactccaccaacactagaaagaacaagaactgcaccgtcaaagg |
350 |
Q |
| |
|
| | ||||||||||| ||| |||||| ||| | | ||| ||| |||||||| |||||||| || ||||||||||||| |
|
|
| T |
10464689 |
tgttaccatttgcttattgacaacaatggagtggctctgcaccccatcaacactatcaagaacaaatacagcaccgtcaaagg |
10464771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 159 - 350
Target Start/End: Original strand, 10508788 - 10508976
Alignment:
| Q |
159 |
atgacctcaaatccattaatctaagtaagtttacctgatctacaacttcccacggatctgctctcttatggtcaagattgttgatgaacacaagtcttgg |
258 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||||| |||||||||||| | | |||| ||| ||||||||||||| |||||| ||||||||||| |
|
|
| T |
10508788 |
atgacatccaatccattaatctaa---agtttacctgattcacaacttcccacaggttggctcccttgtggtcaagattgtcgatgaatacaagtcttgg |
10508884 |
T |
|
| Q |
259 |
aagttgaaattccatcatttgcttatcaacagaaatggaatgggttttcactccaccaacactagaaagaacaagaactgcaccgtcaaagg |
350 |
Q |
| |
|
||||||| || | ||||||||||||||||| |||||| ||| || ||| ||| |||||| ||||||||||||||| ||| ||||||||| |
|
|
| T |
10508885 |
aagttgatatgttaccatttgcttatcaacagcaatggactggtcttgcaccccatcaacaccagaaagaacaagaacggcagcgtcaaagg |
10508976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 350
Target Start/End: Original strand, 10519481 - 10519646
Alignment:
| Q |
185 |
aagtttacctgatctacaacttcccacggatctgctctcttatggtcaagattgttgatgaacacaagtcttggaagttgaaattccatcatttgcttat |
284 |
Q |
| |
|
||||||||||||| || ||||| |||||||| ||||| ||| |||||||||| |||| ||| |||||||||||||||||| || ||||||||||||| |
|
|
| T |
10519481 |
aagtttacctgatttaaaacttgccacggatttgctcccttttggtcaagatcattgacgaatacaagtcttggaagttgatatgttatcatttgcttat |
10519580 |
T |
|
| Q |
285 |
caacagaaatggaatgggttttcactccaccaacactagaaagaacaagaactgcaccgtcaaagg |
350 |
Q |
| |
|
| |||| |||||| ||| | ||| ||| |||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
10519581 |
ccacagcaatggactggtcctgcaccccatcaacgctagaaagaacaagaacagcactgtcaaagg |
10519646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 10447857 - 10447932
Alignment:
| Q |
188 |
tttacctgatctacaacttcccacggatctgctctcttatggtcaagattgttgatgaacacaagtcttggaagtt |
263 |
Q |
| |
|
|||||||||| | ||||||||| |||| ||||| ||| ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
10447857 |
tttacctgattcaaaacttcccatggatttgctcccttgtggtcaagattgttgataaatacaagtcttggaagtt |
10447932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 335
Target Start/End: Original strand, 10850304 - 10850431
Alignment:
| Q |
208 |
ccacggatctgctctcttatggtcaagattgttgatgaacacaagtcttggaagttgaaattccatcatttgcttatcaacagaaatggaatgggttttc |
307 |
Q |
| |
|
|||||||| ||||| ||| |||| ||| ||||||| || |||||||||||||||||| || | |||| ||||||||| || |||||| || |||| | |
|
|
| T |
10850304 |
ccacggatttgctcccttgtggtgaaggctgttgataaatacaagtcttggaagttgatatcttaacattagcttatcaaaagtaatggattgagtttgc |
10850403 |
T |
|
| Q |
308 |
actccaccaacactagaaagaacaagaa |
335 |
Q |
| |
|
|| ||| |||| ||||||||| |||||| |
|
|
| T |
10850404 |
accccagcaacgctagaaagagcaagaa |
10850431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 335
Target Start/End: Original strand, 27969049 - 27969200
Alignment:
| Q |
184 |
taagtttacctgatctacaacttcccacggatctgctctcttatggtcaagattgttgatgaacacaagtcttggaagttgaaattccatcatttgctta |
283 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| ||||| || |||||||| ||||| || | | |||||||||||||| | || ||||| |||| |
|
|
| T |
27969049 |
taagtttacctgatctaaaacttcccagggatttgctccattgtggtcaagtttgttaatatatataagtcttggaagtttatatcttctcattgtctta |
27969148 |
T |
|
| Q |
284 |
tcaacagaaatggaatgggttttcactccaccaacactagaaagaacaagaa |
335 |
Q |
| |
|
|||| | ||| || | ||||| ||| |||||||||||| |||||||||||| |
|
|
| T |
27969149 |
tcaagaataatagatttggtttgcaccccaccaacactacaaagaacaagaa |
27969200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 335
Target Start/End: Complemental strand, 28091538 - 28091387
Alignment:
| Q |
184 |
taagtttacctgatctacaacttcccacggatctgctctcttatggtcaagattgttgatgaacacaagtcttggaagttgaaattccatcatttgctta |
283 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| ||||| || |||||||| ||||| || | | |||||||||||||| | || ||||| |||| |
|
|
| T |
28091538 |
taagtttacctgatctaaaacttcccagggatttgctccattgtggtcaagtttgttaatatatataagtcttggaagtttatatcttctcattgtctta |
28091439 |
T |
|
| Q |
284 |
tcaacagaaatggaatgggttttcactccaccaacactagaaagaacaagaa |
335 |
Q |
| |
|
|||| | ||| || | ||||| ||| |||||||||||| |||||||||||| |
|
|
| T |
28091438 |
tcaagaataatagatttggtttgcaccccaccaacactacaaagaacaagaa |
28091387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 335
Target Start/End: Complemental strand, 28101770 - 28101619
Alignment:
| Q |
184 |
taagtttacctgatctacaacttcccacggatctgctctcttatggtcaagattgttgatgaacacaagtcttggaagttgaaattccatcatttgctta |
283 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| ||||| || |||||||| ||||| || | | |||||||||||||| | || ||||| |||| |
|
|
| T |
28101770 |
taagtttacctgatctaaaacttcccagggatttgctccattgtggtcaagtttgttaatatatataagtcttggaagtttatatcttctcattgtctta |
28101671 |
T |
|
| Q |
284 |
tcaacagaaatggaatgggttttcactccaccaacactagaaagaacaagaa |
335 |
Q |
| |
|
|||| | ||| || | ||||| ||| |||||||||||| |||||||||||| |
|
|
| T |
28101670 |
tcaagaataatagatttggtttgcaccccaccaacactacaaagaacaagaa |
28101619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 297
Target Start/End: Original strand, 10864127 - 10864237
Alignment:
| Q |
187 |
gtttacctgatctacaacttcccacggatctgctctcttatggtcaagattgttgatgaacacaagtcttggaagttgaaattccatcatttgcttatca |
286 |
Q |
| |
|
||||||||||| || ||||| ||| |||| ||||| ||| |||||||| ||||| || || | ||||||||||||||| || ||||||| ||||||| |
|
|
| T |
10864127 |
gtttacctgatttaaaacttgccatggatttgctcccttgtggtcaaggttgtttataaatataagtcttggaagttggtatcttatcatttccttatca |
10864226 |
T |
|
| Q |
287 |
acagaaatgga |
297 |
Q |
| |
|
|||| |||||| |
|
|
| T |
10864227 |
acagcaatgga |
10864237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 100 - 265
Target Start/End: Complemental strand, 1094624 - 1094459
Alignment:
| Q |
100 |
ggggttcggcgctacatgccgcttgctatctaggattagcaacataatagtcatctataatgacctcaaatccattaatctaagtaagtttacctgatct |
199 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||| | ||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1094624 |
ggggttcggcgctacatgccgcttactatcttggataaaaaacataagaatcatctataatgacctcaaatccattaatctaattaagtttacctgatct |
1094525 |
T |
|
| Q |
200 |
acaacttcccacggatctgctctcttatggtcaagattgttgatgaacacaagtcttggaagttga |
265 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
1094524 |
acaacttcccacggatctgcttccttgtagtcaagactgttgatgaatacaattcttggaagttga |
1094459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 263
Target Start/End: Complemental strand, 33578092 - 33577959
Alignment:
| Q |
124 |
gctatctaggattagcaacataatagtcatctataatgacctcaaatccattaatctaagtaagtttacctgatctacaacttcccacggatctgctctc |
223 |
Q |
| |
|
||||||| |||||| |||||||| | || ||| |||||||| ||||||||||||||| | |||||||||| | |||||||||||||| ||||| | |
|
|
| T |
33578092 |
gctatctgggattaacaacataaga---atttatgatgacctccaatccattaatctaaat---tttacctgattcaaaacttcccacggatttgctccc |
33577999 |
T |
|
| Q |
224 |
ttatggtcaagattgttgatgaacacaagtcttggaagtt |
263 |
Q |
| |
|
|| ||||||| ||||||||| || |||||||||| |||| |
|
|
| T |
33577998 |
ttgtggtcaacattgttgataaattcaagtcttggtagtt |
33577959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 33577510 - 33577429
Alignment:
| Q |
159 |
atgacctcaaatccattaatctaagtaagtttacctgatctacaacttcccacggatctgctctcttatggtcaagattgttgat |
243 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||||| | |||||||||||||| ||||| ||| ||||||| ||||||||| |
|
|
| T |
33577510 |
atgacctccaatccattaatctaaat---tttacctgattcaaaacttcccacggatttgctcccttgtggtcaacattgttgat |
33577429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 114
Target Start/End: Original strand, 19189963 - 19189998
Alignment:
| Q |
79 |
ctataccgctatagcatttttggggttcggcgctac |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19189963 |
ctataccgctatagcatttttggggtttggcgctac |
19189998 |
T |
|
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