View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16943_high_43 (Length: 331)
Name: NF16943_high_43
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_high_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 113 - 315
Target Start/End: Original strand, 5473264 - 5473466
Alignment:
| Q |
113 |
gctatatagtacgggaattattttcacgggaaattcacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtctctattgtta |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5473264 |
gctatatagtacgggaattattttcacgggaaatttacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtgtctattgtta |
5473363 |
T |
|
| Q |
213 |
tgcaattcagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaattcattttattagtgttaagatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
5473364 |
tgcaattcagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccgtttgattaattaagaattcattttattagtgataagatt |
5473463 |
T |
|
| Q |
313 |
aat |
315 |
Q |
| |
|
||| |
|
|
| T |
5473464 |
aat |
5473466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 33529086 - 33529032
Alignment:
| Q |
192 |
tgcactatgtctctattgttatgcaattcagccaaagaaaaaggtggtcaacacc |
246 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
33529086 |
tgcactatgtcttcattgttatgcaattcaaccaaagaaaaaggtggtcagcacc |
33529032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 36392992 - 36393034
Alignment:
| Q |
1 |
cgttgataatttttgggaagagggtaacgaaaatgtgaaaatt |
43 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
36392992 |
cgttgataatttttgggaagagggaaacaaaaatgtgaaaatt |
36393034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 36227550 - 36227509
Alignment:
| Q |
3 |
ttgataatttttgggaagagggtaacg-aaaatgtgaaaatt |
43 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
36227550 |
ttgataatttttgggaagagggaaacgaaaaatgtgaaaatt |
36227509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 105 - 315
Target Start/End: Complemental strand, 27764043 - 27763836
Alignment:
| Q |
105 |
agagaagggctatatagtacgggaattattttcacgggaaattcacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtctc |
204 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27764043 |
agagaagtgctatatagtacgggaattattttcacgggaaattcacggacgcttagcaatctgatcacggtttctattgttatgcagtgcactatatctc |
27763944 |
T |
|
| Q |
205 |
tattgttatgcaattcagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaattcattttattagtg |
304 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27763943 |
tatt---atgcaattcagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccgtttgtttaattaagaattcattttattagtg |
27763847 |
T |
|
| Q |
305 |
ttaagattaat |
315 |
Q |
| |
|
||||||||||| |
|
|
| T |
27763846 |
ttaagattaat |
27763836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 192 - 307
Target Start/End: Original strand, 19384262 - 19384369
Alignment:
| Q |
192 |
tgcactatgtctctattgttatgcaattcagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaatt |
291 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| ||||||||||| || ||||||| | |||||| |||||| |||||||||||| ||||| |
|
|
| T |
19384262 |
tgcactatgtcttcattgttatgcaattcaaccaaataaaaaggtggttaa----caccgtt----tgaatttgatgcaccgtttgtttaattatgaatt |
19384353 |
T |
|
| Q |
292 |
cattttattagtgtta |
307 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
19384354 |
cattttaatagtgtta |
19384369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 32245911 - 32245965
Alignment:
| Q |
192 |
tgcactatgtctctattgttatgcaattcagccaaagaaaaaggtggtcaacacc |
246 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
32245911 |
tgcactatgtcttcattgttatgcaattcaaccaaataaaaaggtggtcaacacc |
32245965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 246
Target Start/End: Complemental strand, 5701101 - 5701029
Alignment:
| Q |
171 |
acggtttctattgttatgcagtgcactatgtctctattgttatgcaattcagccaaagaaaaaggtggtcaacacc |
246 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |||||||||||||||| | |||||||||| ||||||||||| |
|
|
| T |
5701101 |
acggtatctattgttatgca---cactatgtcttcattgttatgcaattcaacaaaagaaaaagatggtcaacacc |
5701029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 115 - 315
Target Start/End: Original strand, 21269108 - 21269307
Alignment:
| Q |
115 |
tatatagtacgggaattattttcacgggaaattcacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtctctattgttatg |
214 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21269108 |
tatatagtacgggaattatttttacgg-aaattcacgaacgcttagcaacctgatcactgtttctattgttatgcagtgcactatgtctctattgttatg |
21269206 |
T |
|
| Q |
215 |
caattcagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaattcattttattagtgttaagattaa |
314 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21269207 |
caatttagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccgtttgtttaattaagaattcattttattattgttaagattaa |
21269306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 104 - 316
Target Start/End: Original strand, 49936615 - 49936824
Alignment:
| Q |
104 |
tagagaagggctatatagtacgggaattattttcacgggaaattcacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtct |
203 |
Q |
| |
|
|||||||| | |||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49936615 |
tagagaagtgatatataatacaggaattattttcacgggaaattcacggacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtct |
49936714 |
T |
|
| Q |
204 |
ctattgttatgcaattcagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaattcattttattagt |
303 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
49936715 |
ctatt---atgcaattcagccaaagaaaaaggtggtcaacacccacagtttcaattaatttgctgcaccgtttgtttaattaagaattcattttattagt |
49936811 |
T |
|
| Q |
304 |
gttaagattaatg |
316 |
Q |
| |
|
||||||||||||| |
|
|
| T |
49936812 |
gttaagattaatg |
49936824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 105 - 315
Target Start/End: Complemental strand, 43549892 - 43549685
Alignment:
| Q |
105 |
agagaagggctatatagtacgggaattattttcacgggaaattcacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtctc |
204 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43549892 |
agagaagtgctatatagtacgggaattattttcacgggaaattcacggacgcttagcaatctgatcacggtttctattgttatgcagtgcactatgtctc |
43549793 |
T |
|
| Q |
205 |
tattgttatgcaattcagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaattcattttattagtg |
304 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43549792 |
ta---ttatgcaattcagccaaagaaaaagctggtcaacatccaccgtttcaattaatttgctccaccgtttgtttaattaagaattcattttattagtg |
43549696 |
T |
|
| Q |
305 |
ttaagattaat |
315 |
Q |
| |
|
||||||||||| |
|
|
| T |
43549695 |
ttaagattaat |
43549685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 638502 - 638553
Alignment:
| Q |
1 |
cgttgataatttttgggaagagggtaacgaaaatgtgaaaattctgggggga |
52 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| | |||||| |
|
|
| T |
638502 |
cgttgataatttttgggaagagggaaacgaaaatgtgaaaattataggggga |
638553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 307
Target Start/End: Complemental strand, 33803709 - 33803604
Alignment:
| Q |
194 |
cactatgtctctattgttatgcaattcagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaattca |
293 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||| |||||||||||||| || |||| | |||||| |||||| ||||||||||| ||||||| |
|
|
| T |
33803709 |
cactatgtcttcattgttatgcaattcaaccaaataaaaaggtggtcaa----catcgtt----tgaatttgttgcaccttttgtttaattgtgaattca |
33803618 |
T |
|
| Q |
294 |
ttttattagtgtta |
307 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
33803617 |
ttttaatagtgtta |
33803604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University