View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16943_high_46 (Length: 305)

Name: NF16943_high_46
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16943_high_46
NF16943_high_46
[»] chr8 (9 HSPs)
chr8 (25-275)||(1350488-1350738)
chr8 (112-238)||(1361149-1361275)
chr8 (152-226)||(1344085-1344159)
chr8 (152-226)||(1355428-1355502)
chr8 (26-67)||(1344031-1344072)
chr8 (26-67)||(1355515-1355556)
chr8 (96-140)||(1344023-1344067)
chr8 (96-140)||(1355520-1355564)
chr8 (182-258)||(1365043-1365119)
[»] chr3 (2 HSPs)
chr3 (152-258)||(24618473-24618579)
chr3 (96-140)||(24618411-24618455)
[»] chr2 (1 HSPs)
chr2 (158-213)||(43364441-43364496)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 25 - 275
Target Start/End: Original strand, 1350488 - 1350738
Alignment:
Q  25 ggatcatgtggttgagtttgatgataagattgatcaggccttaacggcaaaaattgacaagcaagtggagaaagaagatgatcctagggttgagtttgat 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1350488 ggatcatgtggttgagtttgatgataagattgatcaggccttaacggcaaaaattgacaagcaagtggagaaagaagatgatcctagggttgagtttgat 1350587  T
Q  125 gatgagattgatcaggacccgatgaccgacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactcttagag 224  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1350588 gatgagattgatcaggacccaatgaccgacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactcttagag 1350687  T
Q  225 atcgtgacaatcaccaggatatcgttgcatagttgttgatgttgttatatg 275  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1350688 atcgtgacaatcaccgggatatcgttgcatagttgttgatgttgttatatg 1350738  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 1361149 - 1361275
Alignment:
Q  112 ggttgagtttgatgatgagattgatcaggacccgatgaccgacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaa 211  Q
    ||||||||||||||||||||||||||| |||   ||||| |||| ||||||||||||||||||||||||||||||||| |||   |||||||||||||||    
T  1361149 ggttgagtttgatgatgagattgatcatgacttaatgactgacaaagaagtggaagaatttgcgcgcagattaaattgtactcgcgaagagagaataaaa 1361248  T
Q  212 gaaactcttagagatcgtgacaatcac 238  Q
    |||| |||||||||| |||||||||||    
T  1361249 gaaattcttagagattgtgacaatcac 1361275  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 1344085 - 1344159
Alignment:
Q  152 gacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactcttagagat 226  Q
    ||||| ||||| ||||||||||| ||||||||||||||  ||| ||||||||||| |||||||| ||||||||||    
T  1344085 gacagggaagtcgaagaatttgcacgcagattaaattgttcttgggaagagagaaaaaaagaaattcttagagat 1344159  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 1355502 - 1355428
Alignment:
Q  152 gacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactcttagagat 226  Q
    ||||| ||||| ||||||||||| ||||||||||||||  ||| ||||||||||| |||||||| ||||||||||    
T  1355502 gacagggaagtcgaagaatttgcacgcagattaaattgttcttgggaagagagaaaaaaagaaattcttagagat 1355428  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 1344031 - 1344072
Alignment:
Q  26 gatcatgtggttgagtttgatgataagattgatcaggcctta 67  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  1344031 gatcttgtggttgagtttgatgatgagattgatcaggcctta 1344072  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 1355556 - 1355515
Alignment:
Q  26 gatcatgtggttgagtttgatgataagattgatcaggcctta 67  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  1355556 gatcttgtggttgagtttgatgatgagattgatcaggcctta 1355515  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 1344023 - 1344067
Alignment:
Q  96 aagaagatgatcctagggttgagtttgatgatgagattgatcagg 140  Q
    |||||||||||| |  |||||||||||||||||||||||||||||    
T  1344023 aagaagatgatcttgtggttgagtttgatgatgagattgatcagg 1344067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 1355564 - 1355520
Alignment:
Q  96 aagaagatgatcctagggttgagtttgatgatgagattgatcagg 140  Q
    |||||||||||| |  |||||||||||||||||||||||||||||    
T  1355564 aagaagatgatcttgtggttgagtttgatgatgagattgatcagg 1355520  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 1365043 - 1365119
Alignment:
Q  182 ttaaattgcactttggaagagagaataaaagaaactcttagagatcgtgacaatcaccaggatatcgttgcatagtt 258  Q
    ||||||||  |||||||||||||||||||||||| | ||| | ||  || ||||||| |||| || |||||||||||    
T  1365043 ttaaattgttctttggaagagagaataaaagaaattattacatatgttggcaatcacaaggaaattgttgcatagtt 1365119  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 258
Target Start/End: Original strand, 24618473 - 24618579
Alignment:
Q  152 gacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactcttagagatcgtgacaatcaccaggatatcgttg 251  Q
    ||||| ||||||||||||||||| ||||||||||| ||  ||| ||||||||| | || ||||| |||||||| |  || ||||||| |||| ||  |||    
T  24618473 gacagggaagtggaagaatttgcacgcagattaaactgtgcttgggaagagaggaaaatagaaattcttagaggtgctggcaatcacaaggaaattattg 24618572  T
Q  252 catagtt 258  Q
    |||||||    
T  24618573 catagtt 24618579  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 24618411 - 24618455
Alignment:
Q  96 aagaagatgatcctagggttgagtttgatgatgagattgatcagg 140  Q
    ||||||||||||||  |||||||||| ||||||||||||||||||    
T  24618411 aagaagatgatcctgtggttgagtttaatgatgagattgatcagg 24618455  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 43364496 - 43364441
Alignment:
Q  158 gaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaaga 213  Q
    ||||||||||||||||| ||||||||||||||  | ||| ||||||||||| ||||    
T  43364496 gaagtggaagaatttgcccgcagattaaattgttccttgcaagagagaatacaaga 43364441  T

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