View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_high_55 (Length: 281)
Name: NF16943_high_55
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_high_55 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 263
Target Start/End: Original strand, 44988439 - 44988694
Alignment:
| Q |
8 |
agataattctgagggataggaaacggttccatttctttaaggacggacaatgttcttgcagaggtcacctatgatgcagaaacatttccttcgtttttgc |
107 |
Q |
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| T |
44988439 |
agataattatgagggataggaaacggttccatttctttaaggatggacaatgttcttgcagaggtcacctatgatgcagaaacatttccttcgtttttgc |
44988538 |
T |
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| Q |
108 |
taaatatattccatggacgatcctagaatttgtgcgtcatttatattgtagcaaggtaaagtgaaaatcaaactatggtctgtattaatctagctgaagg |
207 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44988539 |
taaatatattgcatggacgatcctagaatttgtgcgtcatttatattgtagcaaggtaaagtgaaaatcaaactatggtctgtattaatctagctgaagg |
44988638 |
T |
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| Q |
208 |
aaagataacaaatattgttgatgttacataagtaagctagtttacccttgcaatta |
263 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44988639 |
aaagataacaaatattgttgatgatacataagtaagctagtttacccttgcaatta |
44988694 |
T |
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