View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_high_57 (Length: 272)
Name: NF16943_high_57
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_high_57 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 40209821 - 40209581
Alignment:
| Q |
18 |
gtttgcaaggacaattattttgattcctatttgttataaacttagctctttcatattaattcatttttaaaaatgttatatttgattataatttaggtgt |
117 |
Q |
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| T |
40209821 |
gtttgcaaggacaattattttgattcctatttgttctaaacttagctctttcatattaattcatttttaaaaatggtatatttgattataatttaggtgt |
40209722 |
T |
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| Q |
118 |
gtccagataagttcatctggcaagccaagccaagctattgtcatctaacaaaagtgacaactactttccctcttattttaatcacatcaacaattactta |
217 |
Q |
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| T |
40209721 |
gtccagataagttcatctggcaagccaagcc-----attgtcatctaacaaaaatgacaactactttccctcttattttaatcacatcaacaattactta |
40209627 |
T |
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| Q |
218 |
atactgaaaccaatgattgattgcattcttcaattgtcagtataat |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40209626 |
atactgaaaccaatgattgattgcattcttcaattgtcaatataat |
40209581 |
T |
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