View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_high_6 (Length: 677)
Name: NF16943_high_6
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 18 - 637
Target Start/End: Original strand, 41573732 - 41574332
Alignment:
| Q |
18 |
caaatcagaacactggtatatccatccacaactgtagaatcctagccacacaagatcttgaagcctccaagggaaatttcacaacatatcttggccgtcc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41573732 |
caaatcagaacactggtatatccatccacaactgtaggatcctagccacacaagatcttgaagcctccaagggaaatttcacaacatatcttggccgtcc |
41573831 |
T |
|
| Q |
118 |
atggaaactatactctagaacagtgtacatgttatcttacatgggagatcatgtacatccacgtggatggttagagtggaatacaacatttgctttagac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41573832 |
atggaaactatactctagaacagtgtacatgttatcttacatgggagatcatgtacatccacgtggatggttagagtggaatacaacatttgctttagac |
41573931 |
T |
|
| Q |
218 |
actttgtattatggggaatacatgaattatggacctggtggagctattgggcaacgtgtaaagtggcctgggtatcgggttattacatccaccgtggaag |
317 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41573932 |
actttgtattatggtgaatacatgaattatggacctggtggagctattgggcaacgtgtaaagtggcctgggtatcgggttattacatccaccgtggaag |
41574031 |
T |
|
| Q |
318 |
caaatagattcacggtggcccaattcatatcagggtccacttggttgccctctactggggtggcatatgtagctggcttatccacttgaagtctattctg |
417 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41574032 |
caaatagattcacggtggcccaattcatatcggggtccacttggttgccctctactggggtggcatatgtagctggcttatccacttgaagtctattctg |
41574131 |
T |
|
| Q |
418 |
ctgctgcatgcaagtatagatagatgatacatttcaatctttagtcttatttcattgttcaaaagcactaatttgatttgattttgcccgtataatttta |
517 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41574132 |
ctgctgcatgcaagtatagatagatgatac------------------atttcattgttcaaaagcactaatttgatttga-tttgcccgtataatttta |
41574212 |
T |
|
| Q |
518 |
tagtacatactttatttggtaattgtaccaaaaactacatatatagttttcgtcgggcacaatgcttattttttccagtgataataatgagaaaatataa |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41574213 |
tagtacatactttatttggtaattgtaccaaaaactacatatatagttttcgtcgggcacaatgcttattttttccagtgataataatgagaaaatataa |
41574312 |
T |
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| Q |
618 |
gttgtaaacggtgtttcata |
637 |
Q |
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| T |
41574313 |
gttgtaaacgttgtttcata |
41574332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 100 - 345
Target Start/End: Complemental strand, 745081 - 744836
Alignment:
| Q |
100 |
aacatatcttggccgtccatggaaactatactctagaacagtgtacatgttatcttacatgggagatcatgtacatccacgtggatggttagagtggaat |
199 |
Q |
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||||||| | || |||||||||||| | || ||||| || || || ||||| || || ||||| |||||||| ||||||| ||||||||| || |||||| |
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| T |
745081 |
aacatatttgggtcgtccatggaaaatgtattctaggactgtatatatgttgtcctatatgggtgatcatgtgcatccacatggatggttggaatggaat |
744982 |
T |
|
| Q |
200 |
acaacatttgctttagacactttgtattatggggaatacatgaattatggacctggtggagctattgggcaacgtgtaaagtggcctgggtatcgggtta |
299 |
Q |
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||||||||| | |||||||||||||| || |||||||||| |||||| || | ||||| || ||||| || || ||||| ||||||||||| | |
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| T |
744981 |
ggtgactttgctttaaaaactttgtattatggtgagtacatgaattttggaccgggcgcggctatcggacaacgggtcaaatggcccgggtatcgggtca |
744882 |
T |
|
| Q |
300 |
ttacatccaccgtggaagcaaatagattcacggtggcccaattcat |
345 |
Q |
| |
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|||| || || |||| || ||||||| || |||||||||||||| |
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| T |
744881 |
ttacttcaactctggaggccaatagatataccgtggcccaattcat |
744836 |
T |
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