View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_high_64 (Length: 251)
Name: NF16943_high_64
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_high_64 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 11412209 - 11411977
Alignment:
| Q |
1 |
acccatctcaactctctttcaaacatgcacttattttagtcttacttggtatattgagccaaagcttgatgtcaggcctacaatgatttagtttcagctt |
100 |
Q |
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| T |
11412209 |
acccatctcaactctctttcaaacatgcacttattttagtctcacttggtatattgagccaaagcttgatgccaggcctacaatgatttagtttcagctt |
11412110 |
T |
|
| Q |
101 |
aataaagaaagaatttctctaatatttcaagaatgtacatcaacatatcattaattcaagggatgcnnnnnnnnnnnnnnnnnnnngttataaacttttc |
200 |
Q |
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| T |
11412109 |
aataaagaaagaatttctctaatatttcaagaatgtacatcaacatatcattaattcaagggatgctttatttattttaattttttgttataaacttttc |
11412010 |
T |
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| Q |
201 |
aatattcttccctgacgatgatttgaattccat |
233 |
Q |
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| T |
11412009 |
aatattcttccctgacgatgatttgaattccat |
11411977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 29521608 - 29521752
Alignment:
| Q |
24 |
catgcacttattttagtcttacttggtatattgagccaaagcttgatgtca--ggcctacaatgatttagtttcagcttaataaagaaagaatttctcta |
121 |
Q |
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||||||||||||||||||| ||||| |||||| ||| |||||||||||| | |||||||||||||||| ||||||| ||||||||| |||||||||| |
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| T |
29521608 |
catgcacttattttagtctcacttgatatattaagctaaagcttgatgttgatgtcctacaatgatttagtctcagcttcataaagaaataatttctcta |
29521707 |
T |
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| Q |
122 |
atatttcaagaatgtacatcaacatatcattaattcaagggatgc |
166 |
Q |
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| T |
29521708 |
atatttcaagaatctacatctgcacatcattagttcaagggatgc |
29521752 |
T |
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