View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_high_7 (Length: 675)
Name: NF16943_high_7
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 589; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Original strand, 8578297 - 8578889
Alignment:
| Q |
1 |
agaaagaaagagaagcgctataggtacaaagtgtttaagaaaaggtatgcaatgatcacacaccataatcaaatcggaaattctggttccaaactcggct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8578297 |
agaaagaaagagaagcgctataggtacaaagtgtttaagaaaaggtatgcaatgatcacacaccataatcaaatcggaaattctggttccaaactcggct |
8578396 |
T |
|
| Q |
101 |
tcaatgattttgccgatctatcctgtgttgaactcgctcatcttggggaaggacatccatcaccgatggtgttagggtacaataactaggtctacatcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8578397 |
tcaatgattttgccgatctatcctgtgttgaactcgctcatcttggggaaggacatccatcaccgatggtgttagggtacaataacttggtctacatcat |
8578496 |
T |
|
| Q |
201 |
tttctcctttaattttataattggcattgttattttaatcatgtgttcaaaattgattgcttgcttactactctattttgttcttgtttttcatcgtgac |
300 |
Q |
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| T |
8578497 |
tttctcctttaattttataattggcattgttattttaatcatgtgttcaaaattgattgcttgcttactactctattttgttcttgtttttcatcgtgac |
8578596 |
T |
|
| Q |
301 |
ttgcaggatgaaatagtatatggattgcaggaagaaatattttggctactaggatgaaataaacgatcttggaaacatcaacatcgttatcttgttaagt |
400 |
Q |
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| T |
8578597 |
ttgcaggatgaaatagtatatggattgcaggaagaaatattttggctactaggatgaaataaacgatcttggaaacatcaacatcgttatcttgttaagt |
8578696 |
T |
|
| Q |
401 |
ttataggtttatggaggttagaggatccataagcaaaaattatcttttagtttatgaatttatgcatgagtgtcgtgtgaactgtggagagttgactatt |
500 |
Q |
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| T |
8578697 |
ttataggtttatggaggttagaggatccataagcaaaaattatcttttagtttatgaatttatgcatgagtgtcgtgtgaactgtggagagttgactatt |
8578796 |
T |
|
| Q |
501 |
caagactaagttttatatcttgaatgcagcagcattattgtttttcaagttaccacaactacaatacaattgtgattgatttcatatcagcca |
593 |
Q |
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| T |
8578797 |
caagactaagttttatatcttgaatgcagcagcattattgtttttcaagttaccacaactacaatacaattgtgattgatttcatatcagcca |
8578889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 204 - 412
Target Start/End: Complemental strand, 8554163 - 8553958
Alignment:
| Q |
204 |
ctcctttaattttataattggcattgttattttaatcatgtgttcaaaattgattgcttgcttactactctattttgttcttgtttttcatcgtgacttg |
303 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| || ||| |||| |
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| T |
8554163 |
ctcctttaatttcataattggcattgttattttaat---gtgttcaaaattgattgcttgcttactagtatattttgttcttgttttttattgtgccttg |
8554067 |
T |
|
| Q |
304 |
caggatgaaatagtatatggattgcaggaagaaatattttggctactaggatgaaataaacgatcttggaaacatcaacatcgttatcttgttaagttta |
403 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | ||| | ||||||||||||||| |
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| T |
8554066 |
caggatgaaatattatatggattgcaggaagaaatattttggctactaggatgaaataaacaatcttggaaacttctagatcctaatcttgttaagttta |
8553967 |
T |
|
| Q |
404 |
taggtttat |
412 |
Q |
| |
|
||||||||| |
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| T |
8553966 |
taggtttat |
8553958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 589 - 661
Target Start/End: Original strand, 8584154 - 8584226
Alignment:
| Q |
589 |
agccacattccatgtgatactctgcagtatagtatcacagattgcaatacaatcgtaatgtgaatgtgattta |
661 |
Q |
| |
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| T |
8584154 |
agccacattccatgtgatactctgcagtatagtatcacagattgcgatacaatcgtaacgtgaatgtgattta |
8584226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 585 - 642
Target Start/End: Complemental strand, 8553502 - 8553445
Alignment:
| Q |
585 |
tatcagccacattccatgtgatactctgcagtatagtatcacagattgcaatacaatc |
642 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
8553502 |
tatcaaccacatttgatgtgatactctgcagtatagtatcacagattgcgatagaatc |
8553445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 513
Target Start/End: Complemental strand, 8553940 - 8553908
Alignment:
| Q |
481 |
actgtggagagttgactattcaagactaagttt |
513 |
Q |
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| T |
8553940 |
actgtggagagttgactattcaagactaagttt |
8553908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 237 - 375
Target Start/End: Complemental strand, 33443178 - 33443039
Alignment:
| Q |
237 |
aatcatgtgttcaaaattgattgcttgcttactactctattttgttcttgttttt-catcgtgacttgcaggatgaaatagtatatggattgcaggaaga |
335 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| | |||||||||||||||||| || ||| |||||||||||||||| ||||||||||||||||||| |
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| T |
33443178 |
aatcatgtattcaaaattgcttgcttgcttactagtatattttgttcttgttttttcactgtgccttgcaggatgaaatattatatggattgcaggaaga |
33443079 |
T |
|
| Q |
336 |
aatattttggctactaggatgaaataaacgatcttggaaa |
375 |
Q |
| |
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| T |
33443078 |
aatattttggctattaagatgaaaaaagcgatcttggaaa |
33443039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 33443463 - 33443289
Alignment:
| Q |
5 |
agaaagagaagcgctataggtacaaagtgtttaagaaaaggtatgcaatgatcacacaccataatcaaatcggaaattctggttccaaactcggcttcaa |
104 |
Q |
| |
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|||||||||||| ||| |||| |||||||||||||||||||||||||| | |||| | || ||||||||||||||||||||||| ||||| || |||| |
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| T |
33443463 |
agaaagagaagcactacaggttcaaagtgtttaagaaaaggtatgcaacggtcacccgacacaatcaaatcggaaattctggttctgaactcagcctcaa |
33443364 |
T |
|
| Q |
105 |
tgattttgccgatctatcctgtgttgaactcgctcatcttggggaaggacatccatcaccgatggtgttagggta |
179 |
Q |
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|||||| || ||||||||||| |||||||| ||||| ||| ||||||||| ||||||||| ||| | |||||||| |
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| T |
33443363 |
tgatttcgctgatctatcctgggttgaacttgctcaacttagggaaggacgtccatcaccaatgattttagggta |
33443289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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