View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16943_low_1 (Length: 1356)
Name: NF16943_low_1
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 1087; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1087; E-Value: 0
Query Start/End: Original strand, 14 - 1341
Target Start/End: Complemental strand, 34948221 - 34946901
Alignment:
| Q |
14 |
cagagaccccaattcaatcacgaacaagatgtcataactctctgaagatggtgcaagaaacgaataaatgttgagttgtttccacttctcaacacccggt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34948221 |
cagagaccccaattcaatcacgaacaagatgtcataactctctgaagatggtgcaagaaatgaataaatgttgagttgtttccacttctcaacacccggt |
34948122 |
T |
|
| Q |
114 |
cacgcacatctgattctcctgagaaataatcccatgagctacaagattcgcttttgttggtaatctgttacagagaagttgtcaaacaagaatagacacc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34948121 |
cacgcacatctgattctcctgagaaataatcccatgagctacaagattcgcttttgttggtaatctgttacagagaagttgtcaaacaagaatagacacc |
34948022 |
T |
|
| Q |
214 |
ttgaacgagacatgtttgtgccaaatcaaatctgaaattgcatccacagtgtgactgtcatctgcaatgagcatataatacacactgcaaacaaaataac |
313 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34948021 |
ttgaacgggacatgtttgtgccaaatcaaatccgaaattgcatccacagtgtgactgtcatctgtaatgagcatataatacacactgcaaacgaaataac |
34947922 |
T |
|
| Q |
314 |
caccagaagtgtcaagacgccatctccgatgatcggaatatgttgtaacaaattgatagtatgtgattgaatattagcgtaaattacctttacagaaaat |
413 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34947921 |
catcagaagtgtcaagacgccatctccgatgatcggaatatgttgtaacaaattgatagtatgtgattgaatattagcgtaaattacctttacagaaaat |
34947822 |
T |
|
| Q |
414 |
atatattctttaatctcaaagatttatcaaatcaattcttgaaaattaaaatatagtttatccatacaactacattgttatacattttgttttctaaagt |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34947821 |
atatattctttaatctcaaagatttatcaaatcaattcttaaaaattaaaatatagtttatccatacaactagattgttatacattttgttttctaaagt |
34947722 |
T |
|
| Q |
514 |
acaattagttgataattaatttgcaaccagcctaattatatgtatgagtgaaattagtaataacatcattagcatcagtctagcataatttgtaatttta |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34947721 |
acaattagttgataattaatttgcaaccagcttaattatatgtatgagtgaaattagtaataacatcattagcattagtctagcataatttgtaatttta |
34947622 |
T |
|
| Q |
614 |
ttgtggtatt-ttttccctcaagcatgatttttgtaagaaatcttcctcaaacaaagaagcatatgcaattcttagt---------nnnnnnnnnngtgc |
703 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34947621 |
ttgtggtatttttttccctcaagcatgatttttgtaagaaatcttcctcaaacaaagaagcatatgcaattcttagtaaaaaaaaaaaaaaaaaaaaggc |
34947522 |
T |
|
| Q |
704 |
ctgcaacacttattctaactctaacactccattttcaatgttacacctcttattgaatgaaattggtatatctttagacttggtttggtaacgtt-gatt |
802 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | || |
|
|
| T |
34947521 |
cagcaacacttattctaactctaacactccattttcaatgttacacctcttattgaatgaaattggtatatctttaaacttggtttggtaacgttggttt |
34947422 |
T |
|
| Q |
803 |
cagactttagatttgatctgttgatattgacttaaggctttggagtatgaacattttaaaatctcatattcgattcatctctatattaattttagtagga |
902 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
34947421 |
cagactttagatttgatctgttggtattgacttaaagctttggagtatgaacattttaaaatctcatagtcgattcatctccatattaattttagtagga |
34947322 |
T |
|
| Q |
903 |
caatttaacttctttnnnnnnnnnnnnnnnnnnnngagttaggagcgattttcttcctatgtgagataagattggcatttatagcacgtgccaaagtcta |
1002 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34947321 |
caatttaacttcttt-------------aaaaaaagagttaggagcgattttctttctatgtgagataagattggcatttatagcacgtgcc-aagtcta |
34947236 |
T |
|
| Q |
1003 |
tgatattttgagattgatatgacacattgccttaaaattcgtccaagcttcataagacataccttaaatgttttcaccactagctagcaataagacacac |
1102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34947235 |
tgatattttgagattgatatgacacattgccttaaaattcgtccaagcttcataagacataccttaaatgttttcgccactagctagcaataagacacac |
34947136 |
T |
|
| Q |
1103 |
ataaatttcctgcatatttacatactgtgataaaagttttcacaacttgctagcaatacacacacatatataatagtaacagttgaaaggaatttattaa |
1202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34947135 |
ataaatttcctgcatatttacatactgtgataaaagttttcacaacttgctagcaatacacacac----ataatagtaacagttgaaaggaatttattaa |
34947040 |
T |
|
| Q |
1203 |
cttatttacattcacatgagagagcaagcatgaacattatcatcattaaacatgttactaacttggtcatctccacgttgagtaacatgaatggttccat |
1302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34947039 |
cttatttacattcacatgagagagcaagcatgaacattatcatcattaaacatgttactaacttggtcatctccacgttgagtaacatgaatggttccat |
34946940 |
T |
|
| Q |
1303 |
gcctatcagggagattgtaaccatgtctatagtaattgt |
1341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34946939 |
gcctatcagggagattgtaaccatgtctatagtaattgt |
34946901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 5e-44; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 5e-44
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 22437089 - 22437364
Alignment:
| Q |
14 |
cagagaccccaattcaatcacgaacaagatgtcataactctctgaagatggtgcaagaaacgaataaatgttgagttgtttccacttctcaacacccggt |
113 |
Q |
| |
|
||||||| ||||| |||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
22437089 |
cagagactccaatccaatcacgaacaaggtgccataactctctgaatatggtgcaagaaacaaataaatgttgagctgtttccacttctccgcacccggt |
22437188 |
T |
|
| Q |
114 |
cacgcacatctgattctcctgagaaataatcccatgagctacaagattcgcttttgttggtaatctgttacagagaagttgtcaaacaagaatagacacc |
213 |
Q |
| |
|
|| ||||| ||| |||||||||| ||||||| ||| |||||||||||| | ||||| || ||||||||||||||| | ||||||| | | |||| |
|
|
| T |
22437189 |
gacacacatatgagcctcctgagaaggaatcccacaagccacaagattcgctctagttggcaacctgttacagagaagtcgctaaacaagtaaaaccacc |
22437288 |
T |
|
| Q |
214 |
ttgaacgagacatgtttgtgccaaatcaaatctgaaattgcatccacagtgtgactgtcatctgcaatgagcatat |
289 |
Q |
| |
|
|| | | ||||||| ||||||||||||| ||| ||| ||||| | |||||||||||| || | ||||||||| |
|
|
| T |
22437289 |
tttattgggacatgtctgtgccaaatcaattctaaaactgcatttgtaatgtgactgtcatttgtattgagcatat |
22437364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 76 - 261
Target Start/End: Original strand, 17318398 - 17318583
Alignment:
| Q |
76 |
aataaatgttgagttgtttccacttctcaacacccggtcacgcacatctgattctcctgagaaataatcccatgagctacaagattcgcttttgttggta |
175 |
Q |
| |
|
|||||||| | ||||||||||||||| | ||||||||||| ||||| || ||| ||||| || |||||| |||| |||||||||||| | ||||||| |
|
|
| T |
17318398 |
aataaatggttagttgtttccacttcaccgcacccggtcacacacatttgcacctcttgagagatgatcccacgagccacaagattcgctatggttggta |
17318497 |
T |
|
| Q |
176 |
atctgttacagagaagttgtcaaacaagaatagacaccttgaacgagacatgtttgtgccaaatcaaatctgaaattgcatccaca |
261 |
Q |
| |
|
| ||||||| ||||||| |||||||||||||||||||| | | ||||||| |||||||||||| ||| |||| ||| |||||| |
|
|
| T |
17318498 |
aactgttacggagaagtctccaaacaagaatagacaccttaatggggacatgtctgtgccaaatcatatccgaaactgcgtccaca |
17318583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 11158882 - 11158935
Alignment:
| Q |
265 |
tgactgtcatctgcaatgagcatataatacacactgcaaacaaaataaccacca |
318 |
Q |
| |
|
||||| ||||||||| | ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
11158882 |
tgactttcatctgcagtaagcatatgatacacactgcagacaaaataaccacca |
11158935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 11158631 - 11158714
Alignment:
| Q |
14 |
cagagaccccaattcaatcacgaacaagatgtcataactctctgaagatggtgcaagaaacgaataaatgttgagttgtttcca |
97 |
Q |
| |
|
|||||||||| || ||| | ||||||||||| || ||||||||||| ||||| |||||||| || || ||||||| ||||||| |
|
|
| T |
11158631 |
cagagacccctatccaacctcgaacaagatgccacaactctctgaaaatggtacaagaaacaaacaagtgttgagccgtttcca |
11158714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 13797739 - 13797479
Alignment:
| Q |
17 |
agaccccaattcaatcacgaacaagatgtcataactctctgaagatggtgcaagaaacgaataaatgttgagttgtttccacttctcaacacccggtcac |
116 |
Q |
| |
|
|||||| ||| ||||||| ||| | ||| |||||||||||||| ||||| ||||| | |||||||||||| | |||||||||| || ||||| ||||| |
|
|
| T |
13797739 |
agaccctaatccaatcacaaactaaatgccataactctctgaatatggtacaagagaagaataaatgttgcgccgtttccacttttccgcacccagtcac |
13797640 |
T |
|
| Q |
117 |
gcacatctgattctcctgagaaataatcccatgagctacaagattcgcttttgttggtaatctgttacagagaagttgtcaaacaagaatagacaccttg |
216 |
Q |
| |
|
|||||||||| ||||||||| | |||||| |||| | |||||| | || ||||| || ||||||| ||||||| || || |||||||||||||| |
|
|
| T |
13797639 |
gcacatctgagcctcctgagagaggatcccacgagcccccagattctccttggttggcaacctgttacggagaagtctccatacgagaatagacaccttt |
13797540 |
T |
|
| Q |
217 |
aacgagacatgtttgtgccaaatcaaatctgaaattgcatccacagtgtgactgtcatctg |
277 |
Q |
| |
|
| | |||| | |||||||||||||||| ||| |||| |||| || ||||||||||||| |
|
|
| T |
13797539 |
accagaacatatatgtgccaaatcaaatccgaagttgcgtccaatgtatgactgtcatctg |
13797479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 45272391 - 45272497
Alignment:
| Q |
14 |
cagagaccccaattcaatcacgaacaagatgtcataactctctgaagatggtgcaagaaacgaataaatgttgagttgtttccacttctcaacacccggt |
113 |
Q |
| |
|
||||||||||||| ||||||||||| | || |||| ||||||||| ||||| ||| | | ||||||||| ||||| |||||||||||| ||||||||| |
|
|
| T |
45272391 |
cagagaccccaatccaatcacgaactaaattccata-ctctctgaatatggtacaatagaagaataaatgatgagtcatttccacttctccacacccggt |
45272489 |
T |
|
| Q |
114 |
cacgcaca |
121 |
Q |
| |
|
|||||||| |
|
|
| T |
45272490 |
cacgcaca |
45272497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 156 - 302
Target Start/End: Original strand, 45272513 - 45272659
Alignment:
| Q |
156 |
aagattcgcttttgttggtaatctgttacagagaagttgtcaaacaagaatagacaccttgaacgagacatgtttgtgccaaatcaaatctgaaattgca |
255 |
Q |
| |
|
||||||||| || ||||| || ||||||| ||||||| ||| |||||||||| |||| | | | |||||||||||||||||||||||||||||||| |
|
|
| T |
45272513 |
aagattcgccttggttggcaacctgttacggagaagtctccaagcaagaatagatgcctttaccaaaacatgtttgtgccaaatcaaatctgaaattgcg |
45272612 |
T |
|
| Q |
256 |
tccacagtgtgactgtcatctgcaatgagcatataatacacactgca |
302 |
Q |
| |
|
|||||| | ||||| |||||| ||||||||| ||| ||| |||| |
|
|
| T |
45272613 |
tccacaatatgactaccatctgttgtgagcatatgataaacattgca |
45272659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 43689512 - 43689428
Alignment:
| Q |
17 |
agaccccaattcaatcacgaacaagatgtcataactctctgaagatggtgcaagaaacgaataaatgttgagttgtttccacttc |
101 |
Q |
| |
|
||||||| || ||| |||||| ||||||||| |||||| ||| ||||| ||||||||||| |||||||| | ||||||||||| |
|
|
| T |
43689512 |
agacccctatccaaccacgaataagatgtcaaaactcttagaaaatggtacaagaaacgaacaaatgttgtgccgtttccacttc |
43689428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 11906163 - 11906210
Alignment:
| Q |
64 |
gtgcaagaaacgaataaatgttgagttgtttccacttctcaacacccg |
111 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
11906163 |
gtgcaagaaaggaataaatgttgagttgtttcgacttctccacacccg |
11906210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 39903482 - 39903418
Alignment:
| Q |
34 |
cgaacaagatgtcataactctctgaagatggtgcaagaaacgaataaatgttgagttgtttccacttc |
101 |
Q |
| |
|
|||||| |||| |||||||| ||||| |||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
39903482 |
cgaacatgatgccataactcgctgaaaatggggcaa---acgaataaatgttgagttgtttccacttc |
39903418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 2070217 - 2070165
Alignment:
| Q |
196 |
caaacaagaatagacaccttgaacgagacatgtttgtgccaaatcaaatctga |
248 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
2070217 |
caaacaaggatagacacctttaacgaaacatgtttgtgttaaatcaaatctga |
2070165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 10392869 - 10392794
Alignment:
| Q |
71 |
aaacgaataaatgttgagttgtttccacttctcaacacccggtcacgcacatctgattctcctgagaaataatccc |
146 |
Q |
| |
|
||||||| |||||||| | ||||||||||||| ||||| ||||| ||||||||| |||| ||||| |||||||| |
|
|
| T |
10392869 |
aaacgaacaaatgttgcgccgtttccacttctccacacctagtcacacacatctgagtctcatgagagataatccc |
10392794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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