View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16943_low_10 (Length: 580)

Name: NF16943_low_10
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16943_low_10
NF16943_low_10
[»] chr8 (4 HSPs)
chr8 (17-423)||(39370049-39370437)
chr8 (448-575)||(39370424-39370551)
chr8 (17-98)||(39356064-39356145)
chr8 (409-458)||(32496719-32496767)
[»] chr3 (1 HSPs)
chr3 (448-543)||(3511669-3511762)
[»] chr2 (1 HSPs)
chr2 (401-461)||(37883016-37883075)
[»] chr1 (1 HSPs)
chr1 (410-530)||(9687435-9687552)
[»] chr7 (1 HSPs)
chr7 (412-460)||(27048996-27049043)


Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 423
Target Start/End: Original strand, 39370049 - 39370437
Alignment:
Q  17 aggattgacacttacaagagcagatcgtgtgattgtagttgatcctgattggaacccaaggtacatcttaaagtattccttttcctcgacattaaaataa 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39370049 aggattgacacttacaagagcagatcgtgttattgtagttgatcctgattggaacccaaggtacatcttaaagtattccttttcctcgacattaaaataa 39370148  T
Q  117 tattgcgaaatggtattattggtaaatgtaattctaaattagaaaatattaaacacttagttgtttatttagtcaataacttcttatttaacaacaaatg 216  Q
    |||||                ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39370149 tattg----------------gtaaaagtaattctaaattagaaaatattaaacacttagttgtttatttagtcaataacttctt-tttaacaacaaatg 39370231  T
Q  217 ttaatattattgtaagggtgagaatcaattattggacctcattataccccactcccccacctgaactatcaagccaacttttttctcctttctttggtga 316  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39370232 ttaatattatgctaagggtgagaatcaattattggacctcattataccccactcccccacctgaactatcaagccaacttttttctcctttctttggtga 39370331  T
Q  317 agaattgtttgtaaagcaaccagagaaaatctccacacaagggnnnnnnnnnctcaataaaaatttattactcaacctgaatgatataagaacaaaattg 416  Q
    ||||||||||||||||||||| |||||||||| ||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39370332 agaattgtttgtaaagcaacctgagaaaatcttcacacaaggg-aaaaaaaactcaataaaaatttattactcaacctgaatgatataagaacaaaattg 39370430  T

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Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 448 - 575
Target Start/End: Original strand, 39370424 - 39370551
Alignment:
Q  448 aaaattgcaaaccccctcaagatacacaattatccaagctcccaatgcaccaaaatagactagagttgttgtggtgaagaaaactcagtatgactccata 547  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39370424 aaaattgcaaaccccatcaagatacacaattatccaagctcccaatgcaccaaaatagactagagttgttgtggtgaagaaaactcagtatgactccata 39370523  T
Q  548 tttatattaactctctacctttgcttct 575  Q
    |||||||||||||||||| |||| ||||    
T  39370524 tttatattaactctctacttttgtttct 39370551  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 39356064 - 39356145
Alignment:
Q  17 aggattgacacttacaagagcagatcgtgtgattgtagttgatcctgattggaacccaaggtacatcttaaagtattccttt 98  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |||| || |||||||||    
T  39356064 aggactgacacttacaagagcagatcgtgtgattgttgttgatcctgcttggaaccctaggtacttcttgaaatattccttt 39356145  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 32496719 - 32496767
Alignment:
Q  409 caaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaa 458  Q
    |||||||||||||| ||||||||| ||||| |||||||| ||||||||||    
T  32496719 caaaattgcaaacc-tctcaattataatttttgcacagagaaattgcaaa 32496767  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 448 - 543
Target Start/End: Original strand, 3511669 - 3511762
Alignment:
Q  448 aaaattgcaaaccccctcaagatacacaattatccaagctcccaatgcaccaaaatagactagagttgttgtggtgaagaaaactcagtatgactc 543  Q
    |||||||||||| | ||||||| |||||| || |||| | |||||| |||| ||| ||||||||||||||||||||| ||||||||| ||| ||||    
T  3511669 aaaattgcaaactctctcaagacacacaactacccaatc-cccaatacacccaaa-agactagagttgttgtggtgatgaaaactcaatataactc 3511762  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 461
Target Start/End: Original strand, 37883016 - 37883075
Alignment:
Q  401 tataagaacaaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaaccc 461  Q
    |||||| ||||||||||||||| |||| |||||||||| ||||  ||||||||||||||||    
T  37883016 tataaggacaaaattgcaaacc-tctcgattacaatttttgcatggaaaaattgcaaaccc 37883075  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 530
Target Start/End: Original strand, 9687435 - 9687552
Alignment:
Q  410 aaaattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaaccccctcaagatacacaattatccaagctcccaatgcaccaaaatagacta 509  Q
    |||||||||||||||||||||||  || | ||||  | |||||||||||||| ||||||| |||||| ||| ||||| || |||  ||| ||| ||||||    
T  9687435 aaaattgcaaaccctctcaattaatatctttgca-tggaaaattgcaaaccctctcaagacacacaactattcaagc-cctaatatacccaaa-agacta 9687531  T
Q  510 gagttgttgtggtgaagaaaa 530  Q
    ||| ||||||||| |||||||    
T  9687532 gagctgttgtggtaaagaaaa 9687552  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 460
Target Start/End: Original strand, 27048996 - 27049043
Alignment:
Q  412 aattgcaaaccctctcaattacaatttgtgcacagaaaaattgcaaacc 460  Q
    ||||||||||| |||||||| |||||| ||||| |||||||||||||||    
T  27048996 aattgcaaacc-tctcaattgcaatttttgcacggaaaaattgcaaacc 27049043  T

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