View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_11 (Length: 580)
Name: NF16943_low_11
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Original strand, 893522 - 894086
Alignment:
| Q |
1 |
agaaatcactaattgtatccatatacataagtaccatactcattgctctcaaagatgcgcatgttttctaaaactacactttttgttcagaaaagagaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
893522 |
agaaatcactaattgtatccatatacataagtaccatactcattgctctcaaagatgcgcatgttttctaaaactacactttttgttcagaaaagagaag |
893621 |
T |
|
| Q |
101 |
tgtaaaagttaaaatattgattttgaaaatacaacagaagaattagaagaaaaatcagagaaattaaataaacccgagacatgagatgggaaaaacaaag |
200 |
Q |
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| T |
893622 |
tgtaaaagttaaaatattgattttgaaaatacaacagaagaattagaagaaaaatcagagaaattaaataaacccgagacatgagatgggaaaaacaaag |
893721 |
T |
|
| Q |
201 |
ataattaaattgaaacaaatgaattaaacagtaaatcacataacatgatattacaggatttgaatcaacatatgaattcaacaatttctgaataaatcta |
300 |
Q |
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| T |
893722 |
ataattaaattgaaacaaatgaattaaacagtaaatcacataacatgatattacaggatttgaatcaacatatgaattcaacaatttctgaataaatcta |
893821 |
T |
|
| Q |
301 |
actaaataaagaaatatataagagagattaaaaaccgaaatgcaccgtaactgtccgtctattttaagaggaaagagcatgaacaaccatagtcacaacg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
893822 |
actaaataaagaaatatataagagagattaaaaaccgaaatgcaccgtaactgtccgtctattttaagaggaaagagcatgaacaaccatagtcacaacg |
893921 |
T |
|
| Q |
401 |
acatcaataaatcacatgtaattcccgcaaatcaattaatcagaattaaaactaaattgaatcatctatctatgcttgctattaataaaggcaaaacatc |
500 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
893922 |
acatcaataaatcacatgtaattcccgcaaataaattaatcagaattaaatctaaattgaatcatctatctatgcttgctattaataaaggcaaaacatc |
894021 |
T |
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| Q |
501 |
aatttagtgtggcctatttttgttccaaaaaataccctcaacttgaaaagacacaggtggaaaat |
565 |
Q |
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| T |
894022 |
aatttagtgtggcctatttttgttccaaaaaataccctcaacttgaaaagacacaggtggaaaat |
894086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 521
Target Start/End: Complemental strand, 41374151 - 41374109
Alignment:
| Q |
479 |
ctattaataaaggcaaaacatcaatttagtgtggcctattttt |
521 |
Q |
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| T |
41374151 |
ctattaataaaggcaaaacatcattttggtgtagcctattttt |
41374109 |
T |
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