View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16943_low_14 (Length: 516)
Name: NF16943_low_14
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 47349994 - 47350230
Alignment:
| Q |
5 |
gtagcaaaggtgatgtttttaggtggaaacaattgtggaaggttttgacggaacaatttgagattgaggagtatgcatacgaggactgtcctcgtttaag |
104 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
47349994 |
gtagcaatggtgatgtttttaggtggaaacaattgtggaaggttttgacggaacaatttgagattgaggagtatggatacgaggacggtcctcgtttaag |
47350093 |
T |
|
| Q |
105 |
gttggctgagatgatgaaggataagggtccagtttgggatgagattgtgaaggagaacgagcttcaacctacgaagttggaagaagttgctgagtggtgg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47350094 |
gttggctgagatgatgaaggataagggtccagtttgggatgagattgtgaaggagaacgagcttcaacctacgaagttggaagaagttgctgagtggtgg |
47350193 |
T |
|
| Q |
205 |
gttgcggatgctacttttggaatggaagacattgtag |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47350194 |
gttgcggatgctacttttggaatggaagacattgtag |
47350230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 250 - 397
Target Start/End: Original strand, 47350604 - 47350751
Alignment:
| Q |
250 |
taatgggacgttaaaaaatgaacaaactgtgaccttcaactaaaacaatgttggaagagagtggtttcttcaagagccatcatactaacttcagctaagc |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47350604 |
taatgggacgttaaaaaatgaacaaactgtgaccttcaactaaaacaatgttggaagagagtggtttcttcaagagccatcatactaacttcagctaagc |
47350703 |
T |
|
| Q |
350 |
gtagctcatgaatcccagctccaatgaaaatgcctttcattctcagct |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47350704 |
gtagctcatgaatcccagctccaatgaaaatgcctttcattctcagct |
47350751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 3818884 - 3818669
Alignment:
| Q |
13 |
ggtgatgtttttaggtggaaacaattgtggaaggttttgacggaacaatttgagattgaggagtatgcat---acgaggactgtcctcgtttaaggttgg |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| | |||||||||||| |||||||||||||| | ||||||| |||||||||| | ||| |
|
|
| T |
3818884 |
ggtgatgtttttaggtggaagcaattgtggaaggttatcgcggaacaatttgggattgaggagtatgggttcgacgaggaaggtcctcgtttgaagttaa |
3818785 |
T |
|
| Q |
110 |
ctgagatgatgaaggataagggtccagtttgggatgagattgtgaaggagaacgagcttcaacctacgaagttggaagaagttgctgagtggtgggttgc |
209 |
Q |
| |
|
| ||| ||||||||||||||||||| |||||||||||||||||||||||||| | | | || |||||| ||||||||||||||||||||||| |||| |
|
|
| T |
3818784 |
cggagttgatgaaggataagggtcctgtttgggatgagattgtgaaggagaatgggttgcaggtaacgaagctggaagaagttgctgagtggtggtttgc |
3818685 |
T |
|
| Q |
210 |
ggatgctacttttgga |
225 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
3818684 |
agatgcttgttttgga |
3818669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 47338993 - 47339208
Alignment:
| Q |
13 |
ggtgatgtttttaggtggaaacaattgtggaaggttttgacggaacaatttgagattgaggagtatgcat---acgaggactgtcctcgtttaaggttgg |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| | |||||||||||| |||||||||||||| | ||||||| |||||||||| | ||| |
|
|
| T |
47338993 |
ggtgatgtttttaggtggaagcaattgtggaaggttatcgcggaacaatttgggattgaggagtatgggttcgacgaggaaggtcctcgtttgaagttaa |
47339092 |
T |
|
| Q |
110 |
ctgagatgatgaaggataagggtccagtttgggatgagattgtgaaggagaacgagcttcaacctacgaagttggaagaagttgctgagtggtgggttgc |
209 |
Q |
| |
|
| ||| ||||||||||||||||||| |||||||||||||||||||||||||| | | | || |||||| ||||||||||||||||||||||| |||| |
|
|
| T |
47339093 |
cggagttgatgaaggataagggtcctgtttgggatgagattgtgaaggagaatgggttgcaggtgacgaagctggaagaagttgctgagtggtggtttgc |
47339192 |
T |
|
| Q |
210 |
ggatgctacttttgga |
225 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
47339193 |
agatgcttgttttgga |
47339208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 5 - 161
Target Start/End: Original strand, 47347455 - 47347614
Alignment:
| Q |
5 |
gtagcaaaggtgatgtttttaggtggaaacaattgtggaaggttttgacggaacaatttgagattgaggagtatgcat---acgaggactgtcctcgttt |
101 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| | |||||||||||| ||||||| |||| |||||||||||||| | ||||||| |||||||||| |
|
|
| T |
47347455 |
gtagcaatggtgatgtttttagatggaaacaactatggaaggttttggcggaacagtttgggattgaggagtatgggtttgacgaggaaggtcctcgttt |
47347554 |
T |
|
| Q |
102 |
aaggttggctgagatgatgaaggataagggtccagtttgggatgagattgtgaaggagaa |
161 |
Q |
| |
|
| |||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47347555 |
gaagttgtcggagttgatgaaggataagggtcctgtttgggatgagattgtgaaggagaa |
47347614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 429 - 502
Target Start/End: Original strand, 47350987 - 47351060
Alignment:
| Q |
429 |
caaaagatatcaaccaacactcacataagaatttgattcaacaaaaacaattctagtagttatacataataact |
502 |
Q |
| |
|
||||| ||||||| ||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47350987 |
caaaaaatatcaaacaagactcacataagaatttgatccaacaaaaacaattttagtagttatacataataact |
47351060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University