View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_15 (Length: 503)
Name: NF16943_low_15
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 38 - 490
Target Start/End: Complemental strand, 23754967 - 23754519
Alignment:
| Q |
38 |
gaactagaaacatatttacgccttaaaaatgtcatgtaagtatgctgctaatatctgttttaattatatgtcttttttcttggtacattaatatgctaat |
137 |
Q |
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| T |
23754967 |
gaactagaaacatatttacgccttaaaaatgtcatgtaagtatgctgctaatatctgttttaattatatgtcttttttcttggtacattaatatgctaat |
23754868 |
T |
|
| Q |
138 |
tcttcttgtaaaatcatgaactttgcagcttacactcttccttgaaagagttgaggttgttgatgaaaacaaacataaatgggatatgcattgatgctgt |
237 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23754867 |
tctacttgtaaaatcatgaactttgcagcttacactctcccttgaaagagttgaggttgttgatgaaaacaaacataaatgggatatgcattgatgctgt |
23754768 |
T |
|
| Q |
238 |
tagctactgtatattatggtcaccacaactttgttgtgttgtattgtaactttcttgtttgtttatagtgtggataagagctagcagctcatttgtgcac |
337 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
23754767 |
tagctact----attatggtcaccacaacttagttgtgttgtattgtaactttcttgtttgtttatagtgtggataagagctagcagctcacttgtgtac |
23754672 |
T |
|
| Q |
338 |
accctcatgaataaaacagtttcactttcagtgttttattttatgtgcctgccaaacaaagttagtggatgcttttacattatatttcatttactattta |
437 |
Q |
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| T |
23754671 |
accctcatgaataaaacagtttcactttcagtgttttattttatgtgcctgccaaaaaaagttagtggatgcttttacattatatttcaattactattta |
23754572 |
T |
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| Q |
438 |
atatagttggtatggatttaatttagatctcacaaaaatcggattttgaatat |
490 |
Q |
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| T |
23754571 |
atatagttggtatggatttaatttagatctcacaaaaatcggattttgaatat |
23754519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 159 - 424
Target Start/End: Complemental strand, 23778765 - 23778504
Alignment:
| Q |
159 |
tttgcagcttacactcttccttgaaagagttgaggttgttgatgaaaacaaacataaatgggatatgcattgatgctgttagctactgtatattatggtc |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||| ||||||||| |
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| T |
23778765 |
tttgcagcttacactcttccttgaaagagttgaggttgttgatgaaagcaaacataaatgggatacgcattgttgctgttagctact----attatggtc |
23778670 |
T |
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| Q |
259 |
accacaactttgttgtgttgtattgtaactttcttgtttgtttatagtgtggataagagctagcagctcatttgtgcacaccctcatgaataaaacagtt |
358 |
Q |
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| T |
23778669 |
atcacaacttagttgtgttgtattgtaactttcttgtttgtttatagtgtggataagacctagcagctgacttgtgtacaccctcatgaataaaacatgt |
23778570 |
T |
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| Q |
359 |
tcactttcagtgttttattttatgtgcctgccaaacaaagttagtggatgcttttacattatattt |
424 |
Q |
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|| | |||||| |||||||||||||||| | ||| |||||||||||| |||||| |||||| |
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| T |
23778569 |
tctttatcagtggtttattttatgtgcctactaaaactttttagtggatgctcttacatcatattt |
23778504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 23752988 - 23752875
Alignment:
| Q |
127 |
aatatgctaattcttcttgtaaaatcatgaactttgcagcttacactcttccttgaaagagttgaggttgttgatgaaaacaaacataaatgggatatgc |
226 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
23752988 |
aatatgctaattcctcttgtaaagtcatgaactttgcagcttacactcttccttgaaaaagttgaggttgttgatgaaaacaaacataaatgggatatcc |
23752889 |
T |
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| Q |
227 |
attgatgctgttag |
240 |
Q |
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| T |
23752888 |
attgatgctgttag |
23752875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 23752723 - 23752673
Alignment:
| Q |
277 |
tgtattgtaactttcttgtttgtttatagtgtggataagagctagcagctca |
328 |
Q |
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|||||||||||||||||||| ||| |||| ||||||||||||||| |||||| |
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| T |
23752723 |
tgtattgtaactttcttgttggtt-atagcgtggataagagctagtagctca |
23752673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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