View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_17 (Length: 466)
Name: NF16943_low_17
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 454
Target Start/End: Complemental strand, 10324646 - 10324212
Alignment:
| Q |
20 |
aaatcacactctcatgatctttgattcacttgatcgtcaggatatttgcaagtacatcatctcttctttgtagcattgccctcannnnnnnnatagtcgg |
119 |
Q |
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| T |
10324646 |
aaatcacactctcacgatctttgatttacttgatcgtcaggatatttgcaggtacaccatctcctctttggagcattgccctcattttttt-atagtcgg |
10324548 |
T |
|
| Q |
120 |
taataaagtctccaactatagtaagtatcaagttgatcgagtaagagcaaatggaagattgaaaacgaagctacgaatacaaaaattgtcggggtaggtg |
219 |
Q |
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| T |
10324547 |
taataaagtctccaactatagtaagtatcaagttgatcgagcaagagcaaatggaagattgaaaacgaagctacgaatacaaaaattgtcggggtaggtg |
10324448 |
T |
|
| Q |
220 |
tgcatg---ttatcgttttgaaagttagcaaatggagttaggaagttgacacgtagcacccacttccactctttttgtaataatggacccatgcttcttg |
316 |
Q |
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|||||| ||| | | || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10324447 |
tgcatggagttagcaaatgga--gttaggaaatggagttaggaagttgacacgtagcacccacttccactctttttgtaataatggacccatgcttcttg |
10324350 |
T |
|
| Q |
317 |
tcgttttctcatctattaggtcttagacattttcactcgaatctccacccgaatcatatggtggcgcgtgggatccactcttgtccttccactcactttc |
416 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10324349 |
tcgttttctcatctgttaggtcttagacattttcactcgaatctccacccaaatcatatggtggcgcgtgggatccactcttgtccttccactcactttc |
10324250 |
T |
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| Q |
417 |
attatctcctctcctgctctaccctgtagttatagtat |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
10324249 |
attatctcctctcctgctctaccctgtagttatagtat |
10324212 |
T |
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