View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_18 (Length: 462)
Name: NF16943_low_18
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 15 - 445
Target Start/End: Original strand, 47679258 - 47679688
Alignment:
| Q |
15 |
gagattcgagatggggaaaatatagaggatctattaggcattgtaagtgtcataccttttctaaaagttcaaaagcttatatagttatagagatttccca |
114 |
Q |
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| T |
47679258 |
gagattcgagatggggaaaatatagaggatctattaggcattgtaagtgtcataccttttctaaaagttcaaaagcttatatagttatagagatttccca |
47679357 |
T |
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| Q |
115 |
attaaaatatttgacagtaaatattgtttttattttcaattgaaaaaattcttgcaggcatggaaaaattggaaagcagggacaacttcagatattgtag |
214 |
Q |
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| T |
47679358 |
attaaaatatttgacagtaaatattgtttttattttcaattgaaaaaattcttgcaggcatggaaaaattggaaagcagggacaacttcagatattgtag |
47679457 |
T |
|
| Q |
215 |
atccaatattacaccaaggttttaataagaatgaaaaaatgagatgcatacatgttggattactttgtgttcaagaagatatagctgtgagaccaaatat |
314 |
Q |
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| T |
47679458 |
atccaatattacaccaaggttttaataagaatgaaaaaatgagatgcatccatgttggattactttgtgttcaagaagatatagctatgagaccaaatat |
47679557 |
T |
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| Q |
315 |
gagttcagttttactaatgcttaatagcaccactttcccactccctgaaccttcggaacctccatttttaatgcaacccaaaagggcattatctatacca |
414 |
Q |
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| T |
47679558 |
gagttcagttttactaatgcttaatagcaccactttcccactccctgaaccttcggaacctccatttttaatgcaacccaaaagggcattatctatacca |
47679657 |
T |
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| Q |
415 |
ttaaatgaacaatattctgtgcccacaaagt |
445 |
Q |
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| T |
47679658 |
ttaaatgaacaatattctgtgcccacaaagt |
47679688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 160 - 445
Target Start/End: Original strand, 47691062 - 47691347
Alignment:
| Q |
160 |
aaattcttgcaggcatggaaaaattggaaagcagggacaacttcagatattgtagatccaatattacaccaaggttttaataagaatgaaaaaatgagat |
259 |
Q |
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| T |
47691062 |
aaattctttcaggcatggaaaaattggaaggcagggacaagttcagatatcgttgatcccatattagaacaaggtttaaacaagaatgaaacaatgagat |
47691161 |
T |
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| Q |
260 |
gcatacatgttggattactttgtgttcaagaagatatagctgtgagaccaaatatgagttcagttttactaatgcttaatagcaccactttcccactccc |
359 |
Q |
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| T |
47691162 |
gcatccatgttggattactttgtgttcaagaagatatagatgtgagaccaactatgagttctgttctattaatgcttaatagcaccactttcccactccc |
47691261 |
T |
|
| Q |
360 |
tgaaccttcggaacctccatttttaatgcaacccaaaagggcattatctataccattaaatgaacaatattctgtgcccacaaagt |
445 |
Q |
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| T |
47691262 |
tgaaccttcggaacctccatttttaatgcaacccaaaagggcattatctatatcattaagtgagcaatattcaggtcccacaaagt |
47691347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 47771544 - 47771591
Alignment:
| Q |
244 |
aatgaaaaaatgagatgcatacatgttggattactttgtgttcaagaa |
291 |
Q |
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| T |
47771544 |
aatgaaataatgagatgcatccatattggcttactttgtgttcaagaa |
47771591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 6497250 - 6497214
Alignment:
| Q |
254 |
tgagatgcatacatgttggattactttgtgttcaaga |
290 |
Q |
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| T |
6497250 |
tgagatgtatacatattggattactttgtgttcaaga |
6497214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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