View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_19 (Length: 452)
Name: NF16943_low_19
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 6e-75; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 273 - 423
Target Start/End: Complemental strand, 36554807 - 36554657
Alignment:
| Q |
273 |
agcagagagcaaatgatcttgttaggaataagattcatccaacctcgattatcagtggatatagagtaagtttttatttacctttctaattttacttgtc |
372 |
Q |
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| T |
36554807 |
agcagagagcaaatgatcttgttaggaataagattcatccaacctcgattatcagtggatatagagtaagtttttatttacctttccaattttacttgtc |
36554708 |
T |
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| Q |
373 |
ttctttcgtaagactatgaatttaattgggaatttctgtaagatcttgttc |
423 |
Q |
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| T |
36554707 |
ttcttttgtaagactatgaatttaattgggaatttctgtaagatcttgttc |
36554657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 36555009 - 36554908
Alignment:
| Q |
73 |
aggttttggttgaacttgctgaacttcaggatagagaagttggagatggtaccacttctgttgtcattgtagctgcagagcttctcaaagtaaatttcca |
172 |
Q |
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| T |
36555009 |
aggttttggttgaacttgctgaacttcaggatagagaagttggagatggtaccacttctgttgtcattgtagctgcagagcttctcaaagtaaatttcca |
36554910 |
T |
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| Q |
173 |
cc |
174 |
Q |
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|| |
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| T |
36554909 |
cc |
36554908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 276 - 378
Target Start/End: Original strand, 2857628 - 2857730
Alignment:
| Q |
276 |
agagagcaaatgatcttgttaggaataagattcatccaacctcgattatcagtggatatagagtaagtttttatttacctttctaattttacttgtcttc |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| ||||| || |
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| T |
2857628 |
agagagcaaatgatcttgttaggaataagattcatccaacctcgattatcagcggatacagagtaagtttttatttaccttttcaattttatttgtcatc |
2857727 |
T |
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| Q |
376 |
ttt |
378 |
Q |
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||| |
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| T |
2857728 |
ttt |
2857730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 2857452 - 2857496
Alignment:
| Q |
73 |
aggttttggttgaacttgctgaacttcaggatagagaagttggag |
117 |
Q |
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| T |
2857452 |
aggttttggttgaacttgctgaacttcaggatagagaagttggag |
2857496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 2857500 - 2857534
Alignment:
| Q |
139 |
ttgtagctgcagagcttctcaaagtaaatttccac |
173 |
Q |
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| T |
2857500 |
ttgtagctgcagagcttctcaaagtaaatttccac |
2857534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 36555068 - 36555033
Alignment:
| Q |
9 |
atttgaatcattcaaatgggtgtttaattattcaga |
44 |
Q |
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| T |
36555068 |
atttgaatcattcaaatgcgtgtttaattattcaga |
36555033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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