View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_20 (Length: 451)
Name: NF16943_low_20
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 241 - 444
Target Start/End: Original strand, 35801401 - 35801604
Alignment:
| Q |
241 |
gaatgtcttcaaagcactcattagcattttctttagaattattgaaaacagattgagataaaaaatgttgctacttagaatgatacaatgctatactata |
340 |
Q |
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| T |
35801401 |
gaatgtcttcaaagaactcattagcattttctttagaattattgaaaacagattgagataaaaaatgttgctacttagaatgatacaatgctatactata |
35801500 |
T |
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| Q |
341 |
gtttaagcattgatatcctattaaaacatgtattaaattttaatcaatctcatccaaatgtgcatagcaaagatttcagtcattttcgaaggggtttgcc |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35801501 |
gtttaagcattgatatcctattaaaacatgtattaaattttaatcaatctcatccaaatgtgtatagcaaagatttcagtcattttcgaaggggtttgcc |
35801600 |
T |
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| Q |
441 |
tatg |
444 |
Q |
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|||| |
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| T |
35801601 |
tatg |
35801604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 33 - 203
Target Start/End: Original strand, 35801193 - 35801363
Alignment:
| Q |
33 |
aattgtatttttgaagtaataatttccaaaaatgtgtaattatatttagaattagagnnnnnnnnacgagtgtcctaaaaactttttaaggattctaaat |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35801193 |
aattgtatttttgaagtaataatttccaaaaatgtgtaatgatatttagaattagagtttttcttacgagtgtcctaaaaactttttaaggattctaaat |
35801292 |
T |
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| Q |
133 |
aataaagaagttattccaatcaacttattttaaaagttaaaaatttcaatttccagtgtattgatagtcac |
203 |
Q |
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| T |
35801293 |
aataaagaagttattccaatcaacttattttaaaagttaaaaattttaaattccagtgtattgatagtcac |
35801363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 444
Target Start/End: Complemental strand, 54847963 - 54847882
Alignment:
| Q |
363 |
aaaacatgtattaaattttaatcaatctcatccaaatgtgcatagcaaagatttcagtcattttcgaaggggtttgcctatg |
444 |
Q |
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| T |
54847963 |
aaaacttgttttgaattttaatcaatctcattcaaatgtgcatatcaaggatttcagtcattttcgaagggtattgcctatg |
54847882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 35438132 - 35438069
Alignment:
| Q |
133 |
aataaagaagttattccaatcaacttattttaaaagttaaaaatttcaatttccagtgtattga |
196 |
Q |
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|||||||||||||||||||| | |||||| |||||||||| ||||| ||||||| || ||||| |
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| T |
35438132 |
aataaagaagttattccaatgcatttatttaaaaagttaaacatttcgatttccaatgcattga |
35438069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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