View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_21 (Length: 448)
Name: NF16943_low_21
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_21 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 45247707 - 45247289
Alignment:
| Q |
18 |
aaacatttctcccaaatggagaaacagagcgatttgaaacatttccgccatgctgttgattgtgctttagaagaggcctcaaggcgcgttgagtttggcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
45247707 |
aaacatttctcccaaatggagaaacagagcgatttgaaacatttccgccatgctgttgattgtgctttagaagaggcctccaggcacgttgagtttggcc |
45247608 |
T |
|
| Q |
118 |
tgtcttgtccttgtatgcccggacaagtgcttcctaagctgaacacaaagttaaatgctaatgatgcgacatcttttgaaccgacggaacttgtcaattt |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45247607 |
tgtcttgtccttgtatgcccggacaagcgcttcctaag------------ttaaatgctaatgatgcgacatcttttgaaccgacggaacttgtcaattt |
45247520 |
T |
|
| Q |
218 |
tgttaaatcattagctcagtcctaacttactgaatttgatagactcgagtttctaagtgctcgtgcccaataatcggccttctatcgctcaaaaggctgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45247519 |
tgttaaatcattagctcagtcctaacttactgaatttgatagactcgagtttgtaagtgctcgtgcccaattgtcggccttctatcgctcaaaaggctgt |
45247420 |
T |
|
| Q |
318 |
tctcaactgcctgagtttgcaatgcttgatcggttgtttgagaatgatatggaaattctacctgaaaggaagaaacaccagtgccatgatcaaattaatg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
45247419 |
tctcaactgcctgagtttgcaatgcttgatcggttgtttgagaatgatatggaaattctacctgaaagggagaaacaccagtgcgatgatcaaattaatg |
45247320 |
T |
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| Q |
418 |
gctaacttttgatgaaaacctatgacggatt |
448 |
Q |
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| T |
45247319 |
gctaacttttgatgaaaacctatgacggatt |
45247289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 44864864 - 44865288
Alignment:
| Q |
18 |
aaacatttctcccaaatggagaaacagagcgatttgaaacatttccgccatgctgttgattgtgctttagaagaggcctcaaggcgcgttgagtttggcc |
117 |
Q |
| |
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||||||||| || ||||| ||||||||| |||||| || ||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||| |
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| T |
44864864 |
aaacatttcaccgaaatgaagaaacagaatgatttggaaaatttccgtcatgctgttgattgtgctttagaagaagcctcaagacgcgttgaatttggcc |
44864963 |
T |
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| Q |
118 |
tgtcttgtccttgtatgcccggacaagtgcttcctaagctgaacacaaagttaaatgctaatgatgcgacatcttttgaaccgacggaacttgtcaattt |
217 |
Q |
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| T |
44864964 |
tttcttgtccttgtatgaccggagaagtgtctcctaagctggagacgcaattaacggctaatgctgcggcatcttttgaacctacgcaacttgtcaattt |
44865063 |
T |
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| Q |
218 |
tgttaaatcattagctcagtcctaacttactgaatttgatagactcgagtttctaagtgctcgtgcccaataatcggccttctatcgctcaaaaggctgt |
317 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||||| ||||||||||||||||||| | |
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| T |
44865064 |
tgtcaaatcattagctcagtcaccacttactgaatttgatagactcgagtttgtaagttctcgtgcccaattgtcggctttctatcgctcaaaaggctat |
44865163 |
T |
|
| Q |
318 |
tctcaactgcctgagtttgcaatgcttgatcggttgtttgagaatgatatggaaattctacctgaaaggaagaaacaccagtgccatgatcaaattaatg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| ||||||| |||||| ||||||||||||||| |
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| T |
44865164 |
tctcaactgcctgagtttgcaatgcttgatcggttgtttgagagtgatatggaaattctgcctataagggagaaacagcagtgcgatgatcaaattaatg |
44865263 |
T |
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| Q |
418 |
gctaacttttgatgaaaacctatga |
442 |
Q |
| |
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|| |||||||||||||| |||| |
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| T |
44865264 |
agcaagttttgatgaaaacccatga |
44865288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 28753937 - 28753538
Alignment:
| Q |
18 |
aaacatttctcccaaatggagaaacagagcgatttgaaacatttccgccatgctgttgattgtgctttagaagaggcctcaaggcgcgttgagtttggcc |
117 |
Q |
| |
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|||||||| || |||||||||||||||| ||| || || ||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| || |
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| T |
28753937 |
aaacatttttctgaaatggagaaacagagtgatatggaaaatttccgccatgccgttgattgtgctttagaagaggcctcaagacgggttgagtttgtcc |
28753838 |
T |
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| Q |
118 |
tgtcttgtccttgtatgcccggacaagtgcttcctaagctgaacacaaagttaaatgctaatgatgcgacatcttttgaaccgacggaacttgtcaattt |
217 |
Q |
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||||||||||||||||||| ||| || | |||| ||||||| || || ||| |||||| ||||| ||||||||||||||| ||||||||||||||| |
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| T |
28753837 |
tgtcttgtccttgtatgcctggagaaacgtatcctgagctgaaaacgaaagtaattgctaacaatgcggcatcttttgaaccgatggaacttgtcaattt |
28753738 |
T |
|
| Q |
218 |
tgttaaatcattagctcagtcctaacttactgaatttgatagactcgagtttctaagtgctcgtgcccaataatcggccttctatcgctcaaaaggctgt |
317 |
Q |
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||||||||| ||||| || || ||||||||||||||||||| | || ||| ||||||| |||| | || || || ||||||||||||||||||| |
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| T |
28753737 |
tgttaaatcgttagcccaatctccacttactgaatttgatagattggattttgtaagtgcatgtgctcgattgtcagctttctatcgctcaaaaggctac |
28753638 |
T |
|
| Q |
318 |
tctcaactgcctgagtttgcaatgcttgatcggttgtttgagaatgatatggaaattctacctgaaaggaagaaacaccagtgccatgatcaaattaatg |
417 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| || | | |||||| ||||||||||||||| |
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| T |
28753637 |
tctcaactgcctgaatttgcaatgcttgatcggttgtttgagaatgatatggaaattctacttgtaagggagcatgagcagtgcgatgatcaaattaatg |
28753538 |
T |
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