View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16943_low_22 (Length: 441)

Name: NF16943_low_22
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16943_low_22
NF16943_low_22
[»] chr6 (6 HSPs)
chr6 (329-438)||(605911-606020)
chr6 (27-150)||(604721-604847)
chr6 (193-249)||(604895-604951)
chr6 (353-399)||(2019181-2019227)
chr6 (400-438)||(68274-68312)
chr6 (400-438)||(33053442-33053480)
[»] chr7 (8 HSPs)
chr7 (400-438)||(30757093-30757131)
chr7 (400-438)||(8013739-8013777)
chr7 (403-438)||(34899878-34899913)
chr7 (400-438)||(40992961-40992999)
chr7 (404-437)||(5078668-5078701)
chr7 (400-437)||(19296657-19296694)
chr7 (401-438)||(19405028-19405065)
chr7 (402-438)||(45350466-45350502)
[»] scaffold0026 (1 HSPs)
scaffold0026 (400-438)||(72138-72176)
[»] chr5 (3 HSPs)
chr5 (400-438)||(13007005-13007043)
chr5 (402-438)||(6012412-6012448)
chr5 (400-438)||(14664153-14664191)
[»] chr4 (4 HSPs)
chr4 (400-438)||(22610981-22611019)
chr4 (400-438)||(4143028-4143066)
chr4 (400-438)||(19853785-19853823)
chr4 (400-438)||(26633944-26633982)
[»] chr3 (12 HSPs)
chr3 (400-438)||(43488871-43488909)
chr3 (400-438)||(9319840-9319878)
chr3 (400-438)||(9998243-9998281)
chr3 (400-438)||(10108015-10108053)
chr3 (400-438)||(10232847-10232885)
chr3 (400-438)||(20988029-20988067)
chr3 (400-438)||(21431402-21431440)
chr3 (400-438)||(35865207-35865245)
chr3 (405-438)||(9688508-9688541)
chr3 (400-437)||(14859274-14859311)
chr3 (400-437)||(50194558-50194595)
chr3 (402-438)||(38545614-38545650)
[»] chr2 (7 HSPs)
chr2 (400-438)||(4098890-4098928)
chr2 (400-438)||(4778540-4778578)
chr2 (400-438)||(7448035-7448073)
chr2 (400-438)||(7646259-7646297)
chr2 (401-438)||(4904410-4904447)
chr2 (401-438)||(31129022-31129059)
chr2 (401-438)||(37416490-37416527)
[»] chr8 (8 HSPs)
chr8 (398-438)||(25191338-25191378)
chr8 (400-438)||(10377476-10377514)
chr8 (400-438)||(29617729-29617767)
chr8 (404-437)||(1236966-1236999)
chr8 (401-438)||(17693885-17693922)
chr8 (401-437)||(8980977-8981013)
chr8 (402-438)||(18537638-18537674)
chr8 (404-436)||(24099534-24099566)
[»] scaffold0445 (1 HSPs)
scaffold0445 (400-438)||(1121-1159)
[»] scaffold0127 (1 HSPs)
scaffold0127 (400-438)||(15269-15307)


Alignment Details
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 329 - 438
Target Start/End: Original strand, 605911 - 606020
Alignment:
Q  329 aaatgacaaatgttcgtagttattaattcctcaaattacttatattgtattaacaattttcctttaaatttctagttttttagtgggagaaacttcaact 428  Q
    |||||||||||||| || |||||||||||||| ||||||||| |||| ||||||||||| ||||||||||| ||||||| |||||||||||||| |||||    
T  605911 aaatgacaaatgttagtggttattaattcctccaattacttacattgcattaacaatttccctttaaatttatagttttctagtgggagaaactccaact 606010  T
Q  429 tctctctaaa 438  Q
    | ||||||||    
T  606011 tttctctaaa 606020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 604721 - 604847
Alignment:
Q  27 gtcttgagtttaagatatagttgaaatttttgttatnnnnnnnnta---tatgttaagagggagatgtccaaccaaatttttccagagacattaattaat 123  Q
    ||||||||||||||||||||||||||||||||||||         |   |||||||| |||||| || |||||||||||||| |||||| |||||||| |    
T  604721 gtcttgagtttaagatatagttgaaatttttgttataaataaaaaaaaatatgttaaaagggaggtggccaaccaaattttttcagagagattaattact 604820  T
Q  124 aacaaagttgatagatactgcgcaccg 150  Q
    ||||||||||||||||||||| |||||    
T  604821 aacaaagttgatagatactgcacaccg 604847  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 604895 - 604951
Alignment:
Q  193 tacgtggaatatttgttggatgatgtacgtggactttgtcacatattggaatatatt 249  Q
    |||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  604895 tacgtgtaatatttgtttgataatgtacgtggactttgtcacatattggaatatatt 604951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 2019181 - 2019227
Alignment:
Q  353 aattcctcaaattacttatattgtattaacaattttcctttaaattt 399  Q
    |||||||||||||||||| |||| ||||||||||| |||||||||||    
T  2019181 aattcctcaaattacttacattgcattaacaatttccctttaaattt 2019227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 68312 - 68274
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  68312 ctagttttttagtaggagaaactccaacttctctctaaa 68274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 33053480 - 33053442
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  33053480 ctagttttctagtgggagaaactccaacttctctctaaa 33053442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 30757131 - 30757093
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30757131 ctagttttttagtgggagaaacttcaacttctctctaaa 30757093  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 8013777 - 8013739
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  8013777 ctagttttttagtgagagaaacttcaacttctctctaaa 8013739  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Complemental strand, 34899913 - 34899878
Alignment:
Q  403 gttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||||||||||||||| |||||||||||||||    
T  34899913 gttttttagtgggagaaactccaacttctctctaaa 34899878  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 40992961 - 40992999
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  40992961 ctagttttctagtgggagaaactccaacttctctctaaa 40992999  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Complemental strand, 5078701 - 5078668
Alignment:
Q  404 ttttttagtgggagaaacttcaacttctctctaa 437  Q
    |||||||||| |||||||||||||||||||||||    
T  5078701 ttttttagtgagagaaacttcaacttctctctaa 5078668  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 437
Target Start/End: Original strand, 19296657 - 19296694
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaa 437  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  19296657 ctagttttttagtgggagaaactccaacttccctctaa 19296694  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 438
Target Start/End: Complemental strand, 19405065 - 19405028
Alignment:
Q  401 tagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  19405065 tagttttttagtgagagaaactccaacttctctctaaa 19405028  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 45350502 - 45350466
Alignment:
Q  402 agttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  45350502 agttttctagtgagagaaacttcaacttctctctaaa 45350466  T

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Target: scaffold0026 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 72176 - 72138
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  72176 ctagttttctagtgggagaaacttcaacttctctctaaa 72138  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 13007005 - 13007043
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  13007005 ctagttttttagtgggagaaactccaacttctctctaaa 13007043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 6012448 - 6012412
Alignment:
Q  402 agttttttagtgggagaaacttcaacttctctctaaa 438  Q
    ||||||||||||||||||||| |||||||||||||||    
T  6012448 agttttttagtgggagaaactccaacttctctctaaa 6012412  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 14664153 - 14664191
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  14664153 ctagttttttagtgagagaaacttcatcttctctctaaa 14664191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 22610981 - 22611019
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  22610981 ctagttttttagtgggagaaactccaacttctctctaaa 22611019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 4143066 - 4143028
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  4143066 ctagttttttagtgggagaaactccaacttctctataaa 4143028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 19853823 - 19853785
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  19853823 ctagttttctagtgggagaaactccaacttctctctaaa 19853785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 26633982 - 26633944
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  26633982 ctagttttttagtgagagaaactccaacttctctctaaa 26633944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 43488909 - 43488871
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  43488909 ctagttttttagtgagagaaacttcaacttctctctaaa 43488871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 9319840 - 9319878
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  9319840 ctagttttttagtgggagaaactctaacttctctctaaa 9319878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 9998243 - 9998281
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  9998243 ctagttttctagtgggagaaactccaacttctctctaaa 9998281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 10108015 - 10108053
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  10108015 ctagttttctagtgggagaaactccaacttctctctaaa 10108053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 10232847 - 10232885
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  10232847 ctagttttctagtgggagaaactccaacttctctctaaa 10232885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 20988067 - 20988029
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  20988067 ctagttttttagtgagagaaactccaacttctctctaaa 20988029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 21431402 - 21431440
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  21431402 ctagttttctagtgggagaaactccaacttctctctaaa 21431440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 35865245 - 35865207
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  35865245 ctagttttctagtgagagaaacttcaacttctctctaaa 35865207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 438
Target Start/End: Complemental strand, 9688541 - 9688508
Alignment:
Q  405 tttttagtgggagaaacttcaacttctctctaaa 438  Q
    ||||||||| ||||||||||||||||||||||||    
T  9688541 tttttagtgagagaaacttcaacttctctctaaa 9688508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 437
Target Start/End: Original strand, 14859274 - 14859311
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaa 437  Q
    |||||||||||| | |||||||||||||||||||||||    
T  14859274 ctagttttttagcgagagaaacttcaacttctctctaa 14859311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 437
Target Start/End: Complemental strand, 50194595 - 50194558
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaa 437  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  50194595 ctagttttttagtgagagaaactccaacttctctctaa 50194558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 438
Target Start/End: Original strand, 38545614 - 38545650
Alignment:
Q  402 agttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  38545614 agttttctagtgagagaaacttcaacttctctctaaa 38545650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 4098890 - 4098928
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  4098890 ctagttttttagtgggagaaactccaacttctctctaaa 4098928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 4778540 - 4778578
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  4778540 ctagttttttagtgggagaaactccaacttctttctaaa 4778578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 7448035 - 7448073
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  7448035 ctagttttctagtgggagaaactccaacttctctctaaa 7448073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 7646259 - 7646297
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  7646259 ctagttttctagtgggagaaactccaacttctctctaaa 7646297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 438
Target Start/End: Complemental strand, 4904447 - 4904410
Alignment:
Q  401 tagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  4904447 tagttttttagtaagagaaacttcaacttctctctaaa 4904410  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 438
Target Start/End: Complemental strand, 31129059 - 31129022
Alignment:
Q  401 tagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    ||||||||||||| || |||||||||||||||||||||    
T  31129059 tagttttttagtgagaaaaacttcaacttctctctaaa 31129022  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 438
Target Start/End: Original strand, 37416490 - 37416527
Alignment:
Q  401 tagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||||| || ||||||||||||||||||||||||    
T  37416490 tagttttttaatgagagaaacttcaacttctctctaaa 37416527  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 438
Target Start/End: Complemental strand, 25191378 - 25191338
Alignment:
Q  398 ttctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  25191378 ttctagttttttagtgagagaaactccaacttctctctaaa 25191338  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 10377476 - 10377514
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  10377476 ctagttttctagtgggagaaactccaacttctctctaaa 10377514  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 29617767 - 29617729
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  29617767 ctagttttttagtgagagaaatttcaacttctctctaaa 29617729  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Complemental strand, 1236999 - 1236966
Alignment:
Q  404 ttttttagtgggagaaacttcaacttctctctaa 437  Q
    |||||||||| |||||||||||||||||||||||    
T  1236999 ttttttagtgagagaaacttcaacttctctctaa 1236966  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 438
Target Start/End: Complemental strand, 17693922 - 17693885
Alignment:
Q  401 tagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  17693922 tagttttttagtgagagaaactccaacttctctctaaa 17693885  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 437
Target Start/End: Original strand, 8980977 - 8981013
Alignment:
Q  401 tagttttttagtgggagaaacttcaacttctctctaa 437  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  8980977 tagttttttagtgagagaaactccaacttctctctaa 8981013  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 18537674 - 18537638
Alignment:
Q  402 agttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  18537674 agttttttagtgagagaaacttcaacttttctctaaa 18537638  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 436
Target Start/End: Complemental strand, 24099566 - 24099534
Alignment:
Q  404 ttttttagtgggagaaacttcaacttctctcta 436  Q
    |||||||||| ||||||||||||||||||||||    
T  24099566 ttttttagtgagagaaacttcaacttctctcta 24099534  T

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Target: scaffold0445 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 1121 - 1159
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  1121 ctagttttttagtgagtgaaacttcaacttctctctaaa 1159  T

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Target: scaffold0127 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 15269 - 15307
Alignment:
Q  400 ctagttttttagtgggagaaacttcaacttctctctaaa 438  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  15269 ctagttttctagtgagagaaacttcaacttctctctaaa 15307  T

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