View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_24 (Length: 435)
Name: NF16943_low_24
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_24 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 398
Target Start/End: Original strand, 6100350 - 6100731
Alignment:
| Q |
17 |
atacttatgaatcctagcttttatttttcttcagtgttcatgaaaacatggtaaatataggtgaatggggtaaataagacaaaggtattgaactataaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6100350 |
atacttatgaatcctagcttttatttttcttcagtgttcatgaaaacatggtaaatataggtgaatggggtaaataagacaaaggtattgaactataaaa |
6100449 |
T |
|
| Q |
117 |
ttactagaagatatgaggtgtcttgaactatatatagattttacttagtctatggaaaattaatgcatgtacaatgtatgtggcacaactctaagggtag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6100450 |
ttactagaagatatgaggtgtcttgaactatatatagattttacttagtctatggaaaattaatgcatgtacaatgtatgtggcacaactctaagggtag |
6100549 |
T |
|
| Q |
217 |
accaagaattttggtaagcttgtttatcacactactaagaagagagctagtcgacctcaaggtatattacccatttggttttgattttatgttgttgaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6100550 |
accaagaattttggtaagcttgtttatcacactactaagaagagagctagtcgacctcaaggtatattacccatttggttttgattttatgttgttgaaa |
6100649 |
T |
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| Q |
317 |
tgaagggtatcttagagtgttccaatttggttggttgcttggaggagttatctacttatacttttaatatttgagaagaatg |
398 |
Q |
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| T |
6100650 |
tgaagggtatcttagagtgttcaaatttggttggttgcttggaggagttatctacttatacttttaatatttgagaagaatg |
6100731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 15036618 - 15036682
Alignment:
| Q |
334 |
tgttccaatttggttggttgcttggaggagttatctacttatacttttaatatttgagaagaatg |
398 |
Q |
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| T |
15036618 |
tgttccaatttggttggttgcttggaagagttatcaacttatgcttttaatatttgagaagaatg |
15036682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 364447 - 364231
Alignment:
| Q |
17 |
atacttatgaatcctagcttttatttttcttcagtgttcatgaaaacatggtaaatataggtgaatggggtaa----ataagacaaaggtattgaactat |
112 |
Q |
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| T |
364447 |
atacttatgaatcctaacttttatttttcttcggtgttcatgaaaacatggtaaatataggtgaatggggtaattaaataagacaaaggtattgaactat |
364348 |
T |
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| Q |
113 |
aaaattactagaagatatgaggtgtcttgaactatatatagattttacttagtctat-ggaaaattaatgcatgtacaatgtatgtggcacaactctaag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||| || |||||||||||||| |
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| T |
364347 |
aaaattactagaagatatgaggtgtcttgaactatatatagactttacttagtctataaaaaaattaatgcatgtataatatacgtggcacaactctaca |
364248 |
T |
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| Q |
212 |
ggtagaccaagaatttt |
228 |
Q |
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||||||||||||||||| |
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| T |
364247 |
ggtagaccaagaatttt |
364231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 224 - 333
Target Start/End: Original strand, 31310103 - 31310212
Alignment:
| Q |
224 |
attttggtaagcttgtttatcacactactaagaagagagctagtcgacctcaaggtatattacccatttggttttgattttatgttgttgaaatgaaggg |
323 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
31310103 |
attttggtaagcttttttatcacactactaagaagagagctagtcgacctcaaggtatattacctatttggttttgattttatggtgttgaaatgaaggg |
31310202 |
T |
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| Q |
324 |
tatcttagag |
333 |
Q |
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|||| ||||| |
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| T |
31310203 |
tatcgtagag |
31310212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 17828068 - 17828023
Alignment:
| Q |
228 |
tggtaagcttgtttatcacactactaagaagagagctagtcgacct |
273 |
Q |
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| T |
17828068 |
tggtaagcttgtttatcagactactaagaagagagctagtggacct |
17828023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 28055395 - 28055336
Alignment:
| Q |
101 |
gtattgaactataaaattactagaagatatgaggtgtcttgaactatatatagattttac |
160 |
Q |
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| T |
28055395 |
gtattgaactataaaatcactataagatatgaggtgtcttgaactatatatagattttac |
28055336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 398
Target Start/End: Complemental strand, 23924739 - 23924666
Alignment:
| Q |
324 |
tatcttagagtgttccaatttggttggttgcttggaggagttatctacttatacttttaatatttgagaagaatg |
398 |
Q |
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|||||||| ||||||| ||||||| |||||||||||||||||||| || | |||||| ||||||||||||||| |
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| T |
23924739 |
tatcttagtttgttccatgttggttg-ttgcttggaggagttatctagttttgcttttactatttgagaagaatg |
23924666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 267
Target Start/End: Complemental strand, 2864864 - 2864825
Alignment:
| Q |
228 |
tggtaagcttgtttatcacactactaagaagagagctagt |
267 |
Q |
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||||| |||||||||||| ||||||||||||||||||||| |
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| T |
2864864 |
tggtaggcttgtttatcatactactaagaagagagctagt |
2864825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 398
Target Start/End: Complemental strand, 11845711 - 11845638
Alignment:
| Q |
324 |
tatcttagagtgttccaatttggttggttgcttggaggagttatctacttatacttttaatatttgagaagaatg |
398 |
Q |
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|||||||| ||||||| ||||||| |||||||||||||||||||| || | |||||| ||||||||||||||| |
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| T |
11845711 |
tatcttagtttgttccatgttggttg-ttgcttggaggagttatctagttttgcttttactatttgagaagaatg |
11845638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 24242458 - 24242503
Alignment:
| Q |
228 |
tggtaagcttgtttatcacactactaagaagagagctagtcgacct |
273 |
Q |
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|||||||||||||||||| || || ||||||||||||||| ||||| |
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| T |
24242458 |
tggtaagcttgtttatcagacaaccaagaagagagctagtggacct |
24242503 |
T |
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