View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16943_low_25 (Length: 417)

Name: NF16943_low_25
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16943_low_25
NF16943_low_25
[»] chr5 (1 HSPs)
chr5 (10-398)||(20322407-20322795)
[»] chr3 (4 HSPs)
chr3 (172-393)||(10560423-10560644)
chr3 (265-368)||(44666868-44666971)
chr3 (172-234)||(19585203-19585265)
chr3 (127-164)||(10560673-10560710)
[»] chr6 (1 HSPs)
chr6 (10-206)||(26971104-26971300)
[»] chr1 (4 HSPs)
chr1 (10-108)||(32611085-32611183)
chr1 (73-368)||(37737203-37737498)
chr1 (116-234)||(52779350-52779468)
chr1 (278-368)||(9802201-9802291)
[»] chr7 (1 HSPs)
chr7 (265-368)||(3005116-3005219)
[»] chr2 (4 HSPs)
chr2 (265-368)||(23682433-23682536)
chr2 (112-209)||(19914707-19914804)
chr2 (73-132)||(28155047-28155106)
chr2 (173-239)||(29501098-29501164)
[»] chr4 (1 HSPs)
chr4 (285-368)||(23165815-23165898)


Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 10 - 398
Target Start/End: Complemental strand, 20322795 - 20322407
Alignment:
Q  10 attattcttgctggtgattccttagaagaatttcaatatattaaatccattttggacacattgttcaaaatcaaagatttaggacaattaaaattcttcc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20322795 attattcttgctggtgattccttagaagaatttcaatatattaaatccattttggacacattgttcaaaatcaaagatttaggacaattaaaattcttcc 20322696  T
Q  110 ttggacttgaagttgctcattctcaacttggtatctctctttgtcagaagaaatattgcttggatttacttgcagattcaggtactattggttctaaacc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20322695 ttggacttgaagttgctcattctcaacttggtatctctctttgtcagaagaaatattgcttggatttacttgcagattcaggtactattggttctaaacc 20322596  T
Q  210 tgcatccactccctctgatccttctctcaagttacataaggatggtgctttaccctatgaggacattccttcttatagaaggttgattggcagattatta 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20322595 tgcatccactccctctgatccttctctcaagttacataaggatggtgctttaccctatgaggacattccttcttatagaaggttgattggcagattatta 20322496  T
Q  310 tatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaatttctatctgctcccactcatactcatcattctgc 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20322495 tatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaatttctatctgctcccactcatactcatcattctgc 20322407  T

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Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 172 - 393
Target Start/End: Complemental strand, 10560644 - 10560423
Alignment:
Q  172 gatttacttgcagattcaggtactattggttctaaacctgcatccactccctctgatccttctctcaagttacataaggatggtgctttaccctatgagg 271  Q
    ||||| |||||| |||||||| | |||||||||||||||||||||  ||| ||||| || ||| |||||||||| ||||||||||| ||||||||||| |    
T  10560644 gatttgcttgcatattcaggtgccattggttctaaacctgcatcctttccttctgacccctctatcaagttacacaaggatggtgccttaccctatgaag 10560545  T
Q  272 acattccttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaatttctatc 371  Q
    ||||| |||| ||||||||| ||||||| |||||| | || || || | ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  10560544 acatttcttcctatagaaggctgattggtagattactctacctaaatatcaccagaccagacatcacctatatcacacaacaattgagtcaatttctatc 10560445  T
Q  372 tgctcccactcatactcatcat 393  Q
    |||||| |||||||||||||||    
T  10560444 tgctcctactcatactcatcat 10560423  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 368
Target Start/End: Complemental strand, 44666971 - 44666868
Alignment:
Q  265 tatgaggacattccttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaat 364  Q
    ||||| ||||| || ||||||||||| |||||| | ||| |  | ||||| ||  |||||| ||||||||||||||  |||||||||||||| || ||||    
T  44666971 tatgaagacatcccctcttatagaagattgattagaagactcatctatctcaattccactataccagatatcaccttcatcacacaacaattaagccaat 44666872  T
Q  365 ttct 368  Q
    ||||    
T  44666871 ttct 44666868  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 19585265 - 19585203
Alignment:
Q  172 gatttacttgcagattcaggtactattggttctaaacctgcatccactccctctgatccttct 234  Q
    |||||||||||||||||||| ||||| | ||| |||||||  || |||||||||||| |||||    
T  19585265 gatttacttgcagattcaggcactatagattccaaacctgtttctactccctctgattcttct 19585203  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 10560710 - 10560673
Alignment:
Q  127 cattctcaacttggtatctctctttgtcagaagaaata 164  Q
    ||||| || |||||||||||||||||||||||||||||    
T  10560710 cattcccatcttggtatctctctttgtcagaagaaata 10560673  T

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Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 26971104 - 26971300
Alignment:
Q  10 attattcttgctggtgattccttagaagaatttcaatatattaaatccattttggacacattgttcaaaatcaaagatttaggacaattaaaattcttcc 109  Q
    ||||||||||||||| |||| ||  | || |||||| | |||||| | |||||||| || || ||||||||||| |||||||| || || ||||| || |    
T  26971104 attattcttgctggtaattcattgcatgagtttcaacacattaaaacaattttggatactttattcaaaatcaaggatttaggtcagttgaaattatttc 26971203  T
Q  110 ttggacttgaagttgctcattctcaacttggtatctctctttgtcagaagaaatattgcttggatttacttgcagattcaggtactattggttctaa 206  Q
    |||| | ||| ||||| |||||| ||||||| || |||||||| ||||| || |||||||| ||| |  |||| ||||| ||| | |||||||||||    
T  26971204 ttggtcatgaggttgcacattcttaacttggcatttctctttgacagaaaaattattgcttagatctcattgctgattctggtgccattggttctaa 26971300  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 32611183 - 32611085
Alignment:
Q  10 attattcttgctggtgattccttagaagaatttcaatatattaaatccattttggacacattgttcaaaatcaaagatttaggacaattaaaattcttc 108  Q
    |||||||||| ||||||||| ||||||||||||||||  ||||||| |||||||||||| |||||| |||| || ||||| || ||  |||||||||||    
T  32611183 attattcttgttggtgattctttagaagaatttcaatccattaaattcattttggacactttgttctaaattaaggatttgggtcagctaaaattcttc 32611085  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 368
Target Start/End: Complemental strand, 37737498 - 37737203
Alignment:
Q  73 ttcaaaatcaaagatttaggacaattaaaattcttccttggacttgaagttgctcattctcaacttggtatctctctttgtcagaagaaa-tattgcttg 171  Q
    ||||||||||||||| | || ||||||||||  ||||||||  | || |||||||||||| |||  || |||||  | ||||| |||||| |||||  ||    
T  37737498 ttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggaatctcattgtgtca-aagaaagtattgtctg 37737400  T
Q  172 gatttacttgcagattcaggtactattggttctaaacctgcatccactccctctgatccttctctcaagttacataaggatggtgctttaccctatgagg 271  Q
    ||||| ||||| |||||||||  | |   ||||||||| | ||||||||| || ||||||||| ||||  | ||||| |||     |   || ||||| |    
T  37737399 gatttgcttgctgattcaggtcttgtcaattctaaaccagtatccactccttcagatccttctatcaaactgcataatgattccagtcctccttatgaag 37737300  T
Q  272 acattccttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaatttct 368  Q
    | ||| |||||||||| || |||||||| ||| |||| ||||| ||||| || ||||| ||||| |||| ||| | |||||||||||||||||||||    
T  37737299 atatttcttcttataggagattgattggtagactattgtatctgaacacaacaagacctgatattacctttataatacaacaattgagtcaatttct 37737203  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 52779350 - 52779468
Alignment:
Q  116 ttgaagttgctcattctcaacttggtatctctctttgtcagaagaaatattgcttggatttacttgcagattcaggtactattggttctaaacctgcatc 215  Q
    ||||||||||||| ||  | ||||| || ||| | |||||||  ||||| ||| | |||||||||||||||||||| ||||| | ||| |||||||  ||    
T  52779350 ttgaagttgctcactccaagcttggaatttctttatgtcagagaaaatactgccttgatttacttgcagattcaggcactatagattccaaacctgtttc 52779449  T
Q  216 cactccctctgatccttct 234  Q
     |||||||||||| |||||    
T  52779450 tactccctctgattcttct 52779468  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 368
Target Start/End: Complemental strand, 9802291 - 9802201
Alignment:
Q  278 cttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaatttct 368  Q
    |||| |||||||||||||||||||| ||| | ||||| || || || ||||| ||||| || |  || || ||||||||||||||||||||    
T  9802291 cttcctatagaaggttgattggcaggttactttatctcaatacaacaagacctgatattactttcattactcaacaattgagtcaatttct 9802201  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 265 - 368
Target Start/End: Original strand, 3005116 - 3005219
Alignment:
Q  265 tatgaggacattccttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaat 364  Q
    ||||| || ||| |||||||||| || |||||||| ||| |||| ||||| ||||| || ||||| ||||| |||| ||| |||||||||||||||||||    
T  3005116 tatgaagatatttcttcttataggagattgattggtagactattgtatctgaacacaacaagacctgatattacctttataacacaacaattgagtcaat 3005215  T
Q  365 ttct 368  Q
    ||||    
T  3005216 ttct 3005219  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 265 - 368
Target Start/End: Original strand, 23682433 - 23682536
Alignment:
Q  265 tatgaggacattccttcttatagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaat 364  Q
    ||||| || ||| |||||||||| || |||||||| ||| |||| ||||| ||||| || ||||| ||||| |||| ||| |||||||||||||||||||    
T  23682433 tatgaagatatttcttcttataggagattgattggtagactattgtatctgaacacaacaagacctgatattacctttataacacaacaattgagtcaat 23682532  T
Q  365 ttct 368  Q
    ||||    
T  23682533 ttct 23682536  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 19914804 - 19914707
Alignment:
Q  112 ggacttgaagttgctcattctcaacttggtatctctctttgtcagaagaaatattgcttggatttacttgcagattcaggtactattggttctaaacc 209  Q
    |||||||||||||||||||||||   |||||| ||||| |||||||  || ||||| |||||||||||   ||||||||||    |||||||||||||    
T  19914804 ggacttgaagttgctcattctcagagtggtatttctctatgtcagagaaagtattgtttggatttactgcaagattcaggtttccttggttctaaacc 19914707  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 28155106 - 28155047
Alignment:
Q  73 ttcaaaatcaaagatttaggacaattaaaattcttccttggacttgaagttgctcattct 132  Q
    ||||||||||||||||| || ||  | |||| ||||||||| ||||||||||||||||||    
T  28155106 ttcaaaatcaaagatttgggccagctgaaatacttccttggccttgaagttgctcattct 28155047  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 29501098 - 29501164
Alignment:
Q  173 atttacttgcagattcaggtactattggttctaaacctgcatccactccctctgatccttctctcaa 239  Q
    ||||||||| ||||||| | ||||| || || |||||||  ||||||||||||||| ||||||||||    
T  29501098 atttacttgaagattcaagaactataggctccaaacctgtttccactccctctgattcttctctcaa 29501164  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 368
Target Start/End: Complemental strand, 23165898 - 23165815
Alignment:
Q  285 tagaaggttgattggcagattattatatcttaacaccactagaccagatatcacctatatcacacaacaattgagtcaatttct 368  Q
    |||||||||| ||||||| ||| |||||||||||| ||||||||| ||||| ||||  ||||| |||||| |||| ||||||||    
T  23165898 tagaaggttggttggcaggttactatatcttaacaacactagacctgatattaccttcatcacccaacaactgagccaatttct 23165815  T

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