View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_26 (Length: 406)
Name: NF16943_low_26
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 9 - 392
Target Start/End: Complemental strand, 2725704 - 2725321
Alignment:
| Q |
9 |
atgaatgtgatatttatggtttttgtggtcctaatggaagctgtgatctgacgaactcaccaatatgcacatgtttgaaaggttttgagccgcgaaatgt |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2725704 |
atgaatgtgatatttatggtttttgtggtcctaatggaagctgtgatctgacgaactcaccaatatgcacatgtttgaaaggttttgagccgcgaaatgt |
2725605 |
T |
|
| Q |
109 |
ggatgaatggaatagacaaaattggataagtgggtgtgcgagaaaggcatcactgcagtgtgagagggtgaaatacaatggaagtgaattaggtggcaaa |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2725604 |
ggatgaatggaatagacaaaattggataagtgggtgtgcgagaaaggcatcactgcagtgtgagagggtgaaatacaatggaagtgaattaggtggcaaa |
2725505 |
T |
|
| Q |
209 |
ggagatggttttgtgaaactagagatgacaaagataccagattttgtacaacaatcatatctttttgctgatgcatgtagaactgaatgcttgaataatt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2725504 |
ggagatggttttgtgaaactagagatgacaaagataccagattttgtacaacaatcatatctttttgctgatgcatgtagaactgagtgcttgaataatt |
2725405 |
T |
|
| Q |
309 |
gttcttgtgttgcttatgcatatgatgatgggatccggtgcttgacttggagtggtaaattaatcgacatagtcaggttttcaa |
392 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2725404 |
gttcttgtgttgcttatgcatatgatgatggaatccggtgcttgacttggagtggtaatttaatcgacatagtcaggttttcaa |
2725321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 392
Target Start/End: Complemental strand, 2747185 - 2746802
Alignment:
| Q |
9 |
atgaatgtgatatttatggtttttgtggtcctaatggaagctgtgatctgacgaactcaccaatatgcacatgtttgaaaggttttgagccgcgaaatgt |
108 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2747185 |
atgaatgtgatatttatggtttttgtggtcttaatggaaactgtgattcgacaaactcaccaatatgcacatgtttgacaggttttgagccgcgaaatgt |
2747086 |
T |
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| Q |
109 |
ggatgaatggaatagacaaaattggataagtgggtgtgcgagaaaggcatcactgcagtgtgagagggtgaaatacaatggaagtgaattaggtggcaaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2747085 |
ggatgaatggaatagacaaaattggataagtgggtgtgtgagaaggacatcactgcagtgtgagagggtgaaatacaatggaagtgaattaggcggcaaa |
2746986 |
T |
|
| Q |
209 |
ggagatggttttgtgaaactagagatgacaaagataccagattttgtacaacaatcatatctttttgctgatgcatgtagaactgaatgcttgaataatt |
308 |
Q |
| |
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| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||| | ||||||||||||| |
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| T |
2746985 |
gaagatggttttgtgaagctagagatgacaaaaataccagattttgtacaacaatcatatctttttgttgatgaatgtaaaactcagtgcttgaataatt |
2746886 |
T |
|
| Q |
309 |
gttcttgtgttgcttatgcatatgatgatgggatccggtgcttgacttggagtggtaaattaatcgacatagtcaggttttcaa |
392 |
Q |
| |
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|| ||| ||||||||||| |||| |||| || || ||||| |||||||||||||| ||||| || |||||||||||||||| |
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| T |
2746885 |
gtaattgcactgcttatgcatttgataatggaattcgttgcttaacttggagtggtaatttaattgatatagtcaggttttcaa |
2746802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 9 - 392
Target Start/End: Complemental strand, 2720311 - 2719928
Alignment:
| Q |
9 |
atgaatgtgatatttatggtttttgtggtcctaatggaagctgtgatctgacgaactcaccaatatgcacatgtttgaaaggttttgagccgcgaaatgt |
108 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||||||| || ||| ||| || | ||||||||||||||||| ||||||||||||| |||||| |
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| T |
2720311 |
atgaatgtgacatttatggttattgtggtcctaatggaagttgcgatttgaaaaatttgccaatatgcacatgtttagaaggttttgagccaaaaaatgt |
2720212 |
T |
|
| Q |
109 |
ggatgaatggaatagacaaaattggataagtgggtgtgcgagaaaggcatcactgcagtgtgagagggtgaaatacaatggaagtgaattaggtggcaaa |
208 |
Q |
| |
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|| |||||||||| ||| ||||||| |||||||||| ||||| |||||| || || ||||||||||||||||| ||||| |||| |||||||||||| |
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| T |
2720211 |
agacgaatggaataaacagaattggagtagtgggtgtgtgagaagggcatccctacaatgtgagagggtgaaatataatgggagtgcgttaggtggcaaa |
2720112 |
T |
|
| Q |
209 |
ggagatggttttgtgaaactagagatgacaaagataccagattttgtacaacaatcatatctttttgctgatgcatgtagaactgaatgcttgaataatt |
308 |
Q |
| |
|
||||||| |||||||||||| |||| |||||| ||||||||||||| ||||| |||||||||| || | ||||||||||| |||| ||||||||||||| |
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| T |
2720111 |
ggagatgattttgtgaaactcgagacgacaaaagtaccagattttgtgcaacagtcatatctttctgttaatgcatgtagagctgagtgcttgaataatt |
2720012 |
T |
|
| Q |
309 |
gttcttgtgttgcttatgcatatgatgatgggatccggtgcttgacttggagtggtaaattaatcgacatagtcaggttttcaa |
392 |
Q |
| |
|
|| ||| ||||| |||| ||||||||| || | ||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
2720011 |
gtaattgcacggcttacgcatttgatgatggaattcagtgcttgacttggagtggtaatttaattgacatagtcaggttttcaa |
2719928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 9 - 388
Target Start/End: Complemental strand, 2709312 - 2708933
Alignment:
| Q |
9 |
atgaatgtgatatttatggtttttgtggtcctaatggaagctgtgatctgacgaactcaccaatatgcacatgtttgaaaggttttgagccgcgaaatgt |
108 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||||||||||||||||| ||| || || |||||||| || ||||||| ||||||| |||| |||| || |
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| T |
2709312 |
atgattgtgatgtttatggtatttgtggtcctaatggaagctgtgatttgaaaaattctccaatatgtacttgtttgataggttttaagccaagaaacgt |
2709213 |
T |
|
| Q |
109 |
ggatgaatggaatagacaaaattggataagtgggtgtgcgagaaaggcatcactgcagtgtgagagggtgaaatacaatggaagtgaattaggtggcaaa |
208 |
Q |
| |
|
|| |||||||||||| ||||||||| |||||||||| ||||| ||| |||| || |||||||||| ||| |||||||| |||| ||||| || || |
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| T |
2709212 |
gggcgaatggaatagagaaaattggactagtgggtgtgtgagaagggctacactacaatgtgagagggggaagtacaatgggagtgcattagacggtgaa |
2709113 |
T |
|
| Q |
209 |
ggagatggttttgtgaaactagagatgacaaagataccagattttgtacaacaatcatatctttttgctgatgcatgtagaactgaatgcttgaataatt |
308 |
Q |
| |
|
| ||| || ||| | |||||||||| |||||| ||||||||||||| |||||||||||| || | |||||| ||| ||| ||| ||||||||||||| |
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| T |
2709112 |
gaagacgggtttctaaaactagagacgacaaaaccaccagattttgtagaacaatcatatccttctcttgatgcttgtcgaattgagtgcttgaataatt |
2709013 |
T |
|
| Q |
309 |
gttcttgtgttgcttatgcatatgatgatgggatccggtgcttgacttggagtggtaaattaatcgacatagtcaggttt |
388 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||| |||||||||| |||| |||| ||||||||||||||| |
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|
| T |
2709012 |
gttcttgtgttgcttatgcatatgataatggaatccggtgcttaacttggagtgataaactaattgacatagtcaggttt |
2708933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 9 - 392
Target Start/End: Complemental strand, 2714347 - 2713964
Alignment:
| Q |
9 |
atgaatgtgatatttatggtttttgtggtcctaatggaagctgtgatctgacgaactcaccaatatgcacatgtttgaaaggttttgagccgcgaaatgt |
108 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||||||||||||||| ||| | || ||||| || || ||||||| ||||||| |||| ||||| | |
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| T |
2714347 |
atgattgtgattcttatggtatttgtggtcctaatggaagctgtgatttgaaaatttctccaatttgtacttgtttgataggttttaagccaagaaatat |
2714248 |
T |
|
| Q |
109 |
ggatgaatggaatagacaaaattggataagtgggtgtgcgagaaaggcatcactgcagtgtgagagggtgaaatacaatggaagtgaattaggtggcaaa |
208 |
Q |
| |
|
||| |||||||||||| |||||||| ||||||||||| ||||| |||| ||| |||||||| |||||||| |||| ||| |||| |||||||| || |
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|
| T |
2714247 |
ggacaaatggaatagacgaaattggacaagtgggtgtgtgagaagggcagaactacagtgtgacagggtgaagtacagtgggagtgcattaggtg---aa |
2714151 |
T |
|
| Q |
209 |
ggagatggttttgtgaaactagagatgacaaagataccagattttgtacaacaatcatatctttttgct---gatgcatgtagaactgaatgcttgaata |
305 |
Q |
| |
|
| ||| || ||| | |||||| ||||||||| ||| ||||||||| | | ||||||| || || || || | |||||||| | | |||||||||| |
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|
| T |
2714150 |
gaagacggatttctaaaactaccgatgacaaaaccaccggattttgtagagccatcatatgttctttctcttgacgaatgtagaattcattgcttgaata |
2714051 |
T |
|
| Q |
306 |
attgttcttgtgttgcttatgcatatgatgatgggatccggtgcttgacttggagtggtaaattaatcgacatagtcaggttttcaa |
392 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| || |||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
2714050 |
attgttcttgtgttgcttatgcatttgattatggaattaggtgcttgacttggagtggtaaattaattgacatagtcaggttttcaa |
2713964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 2733928 - 2733887
Alignment:
| Q |
14 |
tgtgatatttatggtttttgtggtcctaatggaagctgtgat |
55 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||| |||| |
|
|
| T |
2733928 |
tgtgatgtttatggtttttgtggtcctaatgaaagctatgat |
2733887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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