View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_27 (Length: 402)
Name: NF16943_low_27
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 12634171 - 12634556
Alignment:
| Q |
1 |
aattctgcataaattaatcatcaaatgcttccaaagttaaataatagcctttgaaataaaaattaacattaacataatcatgcgcctcacggtgtaccaa |
100 |
Q |
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| T |
12634171 |
aattctgcataaattaatcatcaaatgcttccaaagttaaataatagcctttgaaataaaaattaacattaacataatcatgcgcctcacggtgtaccaa |
12634270 |
T |
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| Q |
101 |
tagctgtcaactcgtacaccaagccgatatgcttcgaaaattctgcataatgcagaataaatctgcaatcaaaaacactctccaatgccacaaatgcact |
200 |
Q |
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| T |
12634271 |
tagctgtcaactcatacaccaagctgatatgcttcgaaaattctgcataatgcagaataaatctgcaatcaaaaacactctccaatgccacaaatgcact |
12634370 |
T |
|
| Q |
201 |
cctcaaacatttcacatacacaactcagcnnnnnnntacacataccaaaagccttattaacaaaacaactctcgctacatcagaccaaaataggcgcgga |
300 |
Q |
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| T |
12634371 |
cctcaaacatttcacatacacaactcagcaaaaaaatacacataccaaaagccttattaacaaaacaactctcgctacattagaccaaaataggcgcgga |
12634470 |
T |
|
| Q |
301 |
aattctattctgttacaccagaaaagtgacagttgaatcggcaacaaaaccataccgaaaacgnnnnnnntggcctaagaaatatg |
386 |
Q |
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| T |
12634471 |
aattctattctgttacaccagaaaaatgacagttgaatcggcaacaaaaccataccgaaaacgaaaaaaatggcctaagaaatatg |
12634556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 34008485 - 34008622
Alignment:
| Q |
1 |
aattctgcataaattaatcatcaaatgcttccaaagttaaataatagcctttgaaataaaaattaacattaacataatcatgcgcctcacggtgtaccaa |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||| || ||| |||||||| |
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| T |
34008485 |
aattctgcataaattaatcatcaaatgcttcaaaagttaaata---gcctttggaatataaattaacattaacataatcatgcttctgacgatgtaccaa |
34008581 |
T |
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| Q |
101 |
tagctgtcaactcgtacaccaagccgatatgcttcgaaaat |
141 |
Q |
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| T |
34008582 |
tagctgtcaactcgtacgccaagccaatatgcttcaaaaat |
34008622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 237 - 360
Target Start/End: Complemental strand, 18918619 - 18918496
Alignment:
| Q |
237 |
tacacataccaaaagccttattaacaaaacaactctcgctacatcagaccaaaataggcgcggaaattctattctgttacaccagaaaagtgacagttga |
336 |
Q |
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|||||| ||||||| ||| |||||||| |||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||| |||||| |
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| T |
18918619 |
tacacacaccaaaatttttactaacaaaaaaactctagctacatcagaccaaaacaggcgcggaaattttattttgttacaccagaaaaatgaaagttga |
18918520 |
T |
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| Q |
337 |
atcggcaacaaaaccataccgaaa |
360 |
Q |
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| T |
18918519 |
aatggcaacaaaaccataccgaaa |
18918496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 21124485 - 21124435
Alignment:
| Q |
138 |
aaattctgcataatgcagaataaatctgcaatcaaaaacactctccaatgc |
188 |
Q |
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||||||||||| |||||| | |||||||||||||||||||||||||||||| |
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| T |
21124485 |
aaattctgcattatgcaggaaaaatctgcaatcaaaaacactctccaatgc |
21124435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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