View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_3 (Length: 738)
Name: NF16943_low_3
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 582; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 14 - 719
Target Start/End: Complemental strand, 7527853 - 7527129
Alignment:
| Q |
14 |
cagagacaacgaatgagatagttcaaacattagttaaatagatcatatttttaatccgtctctatacttttgttgatgtaccgacatgtatcattgaacc |
113 |
Q |
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| T |
7527853 |
cagagacagcgaatgagataattcatacattagctaaatagatcatatttttaatccatctccatacttttgttgatgtaccgatatgtatcattgaacc |
7527754 |
T |
|
| Q |
114 |
tatatctaatgaaatgcattaaacttttttccttacaacaacgtgggttcttttactttgcagataaaataaataaacctgatttttaacattgtattag |
213 |
Q |
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| T |
7527753 |
tatatataatgaaatgcattaaacttttttccttacaacaacgtgggttcttttattttgcagataaaataaagaaagctgatttttaacattgtattag |
7527654 |
T |
|
| Q |
214 |
tgttcttttatttgggtagacaatcattttgttctttaaatttgtttttagatagtcaatttagatatccctaaaagactagatgcctttgtaacttgta |
313 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7527653 |
tgttcttttatttgggtagacaatcattttattctttaaatttgtttttagatagtcaatttagatatccctaaaagactagatgcctttgtaacttgta |
7527554 |
T |
|
| Q |
314 |
agctccgtcagttttagatctgttaatctgtaaactattaatttatgctacaaatcttatttaaataattaccatattcgggaaggagatcaggtgctca |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7527553 |
agctccgtcagttttagatctgttaatctgtaaactattaatttatgctacaagtcttaattaaataattaccatattcgggaaggagatcaggtgctca |
7527454 |
T |
|
| Q |
414 |
gtttttgtcttctaaccatttcattatgaaatattaattagtt-------------ttacat------gcttccatttcaaaataatcttttataactca |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||| |
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| T |
7527453 |
gtttttgtcttctaaccatttcattatgaaatattaattagtttatgtcttcttaattaaataatgcagcttccatttcaaaataatcttttataactca |
7527354 |
T |
|
| Q |
495 |
ttgaagatattgtttaatataaatatcacaagtaattgactatatttgactgcttaattcatttcagtttaggtcttactttgattatacttcattgtca |
594 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7527353 |
ttgaagatattgtttaatataaatatcacaagtaattgactatttttgactgcttaattcatttgagtttaggtcttactttgattatacttcattgtca |
7527254 |
T |
|
| Q |
595 |
ccatttagtgtaagatctccttatctttcttagtatgtgcccatgtcattggtcgatttatcacttgaagtgtttctccacattaaaagttaaaactaat |
694 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
7527253 |
ccatttagtgtaagatctccttatctttcttagtatgtgcccatgtcattggtcgatttatcccttgaagtgtttctccacattaaaagttaacactaat |
7527154 |
T |
|
| Q |
695 |
taacactgtattcatgggatagtct |
719 |
Q |
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| T |
7527153 |
taacactgtattcatgggatagtct |
7527129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 390 - 478
Target Start/End: Complemental strand, 7541126 - 7541037
Alignment:
| Q |
390 |
ttcgggaaggagatcaggtgctcagtttttgtct-tctaaccatttcattatgaaatattaattagttttacatgcttccatttcaaaat |
478 |
Q |
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||||||||| ||||||||| |||||||||| ||| ||||||||||||||| | ||||||||||| ||| |||||||| |||||| |||| |
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| T |
7541126 |
ttcgggaagaagatcaggtactcagtttttctctatctaaccatttcatttttaaatattaatttctttcacatgctttcatttctaaat |
7541037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 21822327 - 21822396
Alignment:
| Q |
79 |
acttttgttgatgtaccgacatgtatcattgaacctatatctaatgaaatgcattaaacttttttcctta |
148 |
Q |
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| T |
21822327 |
acttttatcgatgtaccgtcgtgtattattgaactaatatctaatgaaatgctataaacttttttcctta |
21822396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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