View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_33 (Length: 385)
Name: NF16943_low_33
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 47679281 - 47678903
Alignment:
| Q |
1 |
tatattttccccatctcgaatctcagtgtttctctggccacatacaatttctaaaatgattacaccaaaactaaacacatctgacttaactgagaattgt |
100 |
Q |
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| T |
47679281 |
tatattttccccatctcgaatctcagtgtttctctggccacatacaatttctaaaattattacaccaaaactaaacacatctgacttaactgagaattgt |
47679182 |
T |
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| Q |
101 |
ccatgtctaatgtactccggagccatgtatccactgtatcacaaaataattatgctcaatcattagatatgtacgacaatcgatcttcgatgaccgatca |
200 |
Q |
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| T |
47679181 |
ccatgtctaatgtactccggagccatgtatccactgtatcacaaaacaattatgctcaatcattagatatgaacgacaatcgatcttcgatgaccaatca |
47679082 |
T |
|
| Q |
201 |
ttttcattttccacgttttttgttataaaattcttatttggaaatgatgaatatctcattagttcaagcatttccttaatacttacactgttccaacaac |
300 |
Q |
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| T |
47679081 |
ttttgattttccacgttttttgttataaaattcttatttggaaatgatgaatatctcattagttcaagcatttccttaatacttacactgttccaacaac |
47678982 |
T |
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| Q |
301 |
ggtctttgtcatgccatgagtttgattggcatcaaacaatcttgcgattccaaagtctgtaatttttgggttcatctct |
379 |
Q |
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| T |
47678981 |
ggtctttgtcatgccatgagtttgattggcatcaaacaatcttgcgattccaaaatctgtaatttttgggttcatctct |
47678903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 47690606 - 47690457
Alignment:
| Q |
3 |
tattttccccatctcgaatctcagtgtttctctggccacatacaatttctaaaatgattacaccaaaactaaacacatctgacttaactgagaattgtcc |
102 |
Q |
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| T |
47690606 |
tattgtccccatcacggatcttagtgtttctccggccacaaacaatttctaaaataattacaccaaaactgaacacatctgacttgatcgaaaattctcc |
47690507 |
T |
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| Q |
103 |
atgtctaatgtactccggagccatgtatccactgtatcacaaaataatta |
152 |
Q |
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| T |
47690506 |
atgtttaatgtactctggagccatgtatccgctgtatgtcaaaacaatta |
47690457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 374
Target Start/End: Complemental strand, 47690306 - 47690192
Alignment:
| Q |
260 |
tagttcaagcatttccttaatacttacactgttccaacaacggtctttgtcatgccatgagtttgattggcatcaaacaatcttgcgattccaaagtctg |
359 |
Q |
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| T |
47690306 |
tagttctagcatttcttaagtacttactaagttccaataacggtgcttgtcatgccatgagtttgattggcatcaaacaattttgcaatgccaaaatctg |
47690207 |
T |
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| Q |
360 |
taatttttgggttca |
374 |
Q |
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| T |
47690206 |
taatttttggattca |
47690192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 6525607 - 6525563
Alignment:
| Q |
61 |
tacaccaaaactaaacacatctgacttaactgagaattgtccatg |
105 |
Q |
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| T |
6525607 |
tacaccaaaactaaatacatctgacttcactgaaaattgtccatg |
6525563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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