View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_37 (Length: 356)
Name: NF16943_low_37
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 7 - 340
Target Start/End: Original strand, 41784015 - 41784348
Alignment:
| Q |
7 |
ggagcacagaagggtcatctctggattcatctccaccagctacaccttgttggaagacaaaaacctacgctaatgtggttaaagggattcagaataatac |
106 |
Q |
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| T |
41784015 |
ggagctcagaagggtcatctctggattcatctccaccagctacaccttgttggaagacaaaaacctacgctaatgtggttaaagggattcagaataatac |
41784114 |
T |
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| Q |
107 |
tatgaagcttaaagaaacagggacttctaaacagaatattcatggttctgatattcaaagtttcaagtcctgcaacgttgatagattttcctcacacaaa |
206 |
Q |
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| T |
41784115 |
tatgaagcgtaaagaaacagggacttctaaacagaatattcatggttctgatattcaaagtttcaagtcctgcaacgttgatagattttcatcacacaaa |
41784214 |
T |
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| Q |
207 |
gcattgattgaggaacaaattaaagccattgaattaaggaaaaaacattacatcagtgacatcaagcaacatgctctgtctccgaagcaaaatgaggcca |
306 |
Q |
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| T |
41784215 |
gcattgattgaggaacaaattaaagccattgaattaaggaaaaaacattacatcagtgacatcaagcaacatgctctgtctccgaagcaaaatgaggcca |
41784314 |
T |
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| Q |
307 |
aagaaaaagagattcagaaggaaggtaatggtgg |
340 |
Q |
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| T |
41784315 |
aagaaaaagagattcagaagcaaggtaatggtgg |
41784348 |
T |
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