View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_38 (Length: 354)
Name: NF16943_low_38
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 35537393 - 35537050
Alignment:
| Q |
1 |
tgagcaaattagtgtctgattgattttgtaggacgctctcaaatacgttagttttttctttctttcaaagaatgttcagattctattgaaatgtcaagtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35537393 |
tgagcaaattagtgtctgattgattttgtaggacgctctcaaatacgttagttttttttttctttcaaagaatggtcagattctattgaaatgtcaagtt |
35537294 |
T |
|
| Q |
101 |
ggtccctataattaaccatttaccattaactaggtgctaatattttaccaatttaccatcagtttgatccttatattaaccacttactatcaattgtgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35537293 |
ggtccctataattaaccatttaccattaactaggtgctaatattttaccaatttaccatcagtttgatccttatattaaccacttactatcaattgtgtc |
35537194 |
T |
|
| Q |
201 |
ttctcagaaaaactaatatgagtaaaatttggtagagtccaggacctttttgaaatattaataatctcaagaacctatttgatagcgctttataaagtta |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35537193 |
ttctcagaagaactaatatgagtaaaatttggtagagtccaggacctttttgaaatattaataatctcaagaacctatttgatagcgctttataaagtta |
35537094 |
T |
|
| Q |
301 |
gggatgagtttggtggtttacttcgtattatttgtttgatgatg |
344 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35537093 |
gggatgagtttggtggtttacttcgtattatttgtttgatgatg |
35537050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 3938099 - 3938171
Alignment:
| Q |
210 |
aaactaatatgagtaaaatttggtagagtccaggacctttttgaaatattaataatctcaagaacctatttga |
282 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| ||||||||| || |||||| ||| ||||||||||| |
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| T |
3938099 |
aaactaatatgagtaaaatttgatagagtcggagaccattttgaaattttcataatcacaaaaacctatttga |
3938171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 18994756 - 18994688
Alignment:
| Q |
212 |
actaatatgagtaaaatttggtagagtccaggacctttttgaaatattaataatctcaagaacctattt |
280 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||| ||||||||||||| ||||| ||| | |||||||| |
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| T |
18994756 |
actaatatgagaaaaatttgccagagtcgaggacgtttttgaaatattcataatttcatggacctattt |
18994688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 26392978 - 26393019
Alignment:
| Q |
82 |
tctattgaaatgtcaagttggtccctataattaaccatttac |
123 |
Q |
| |
|
|||||| || ||||||||||||||||||| |||||||||||| |
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| T |
26392978 |
tctattaaactgtcaagttggtccctatatttaaccatttac |
26393019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 381161 - 381121
Alignment:
| Q |
212 |
actaatatgagtaaaatttggtagagtccaggacctttttg |
252 |
Q |
| |
|
|||||||||| ||||||||| ||||||| |||||||||||| |
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|
| T |
381161 |
actaatatgaataaaatttgatagagtcaaggacctttttg |
381121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 43541831 - 43541784
Alignment:
| Q |
214 |
taatatgagtaaaatttggtagagtccaggacctttttgaaatattaa |
261 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
43541831 |
taatatgagtaaaatttggcagagtcagtgacctttttgaaatattaa |
43541784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 9094659 - 9094701
Alignment:
| Q |
79 |
gattctattgaaatgtcaagttggtccctataattaaccattt |
121 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| |||||||||| |
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| T |
9094659 |
gattctattaaaatgccaagttggtccctatatttaaccattt |
9094701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 34942737 - 34942797
Alignment:
| Q |
212 |
actaatatgagtaaaatttggta-gagtccaggacctttttgaaatattaataatctcaag |
271 |
Q |
| |
|
||||||||||||||||||| | | ||||| | || |||||||||||||| ||||||||||| |
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| T |
34942737 |
actaatatgagtaaaattttgaaagagtcaatgatctttttgaaatattcataatctcaag |
34942797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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