View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_39 (Length: 353)
Name: NF16943_low_39
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 344
Target Start/End: Original strand, 36554320 - 36554648
Alignment:
| Q |
16 |
atcaggatgttcctagtaataggaaagattaatcaaaaaagttatactcaaaatgtgtgtaactacaacatacagttgctctggacagaaatgactcaat |
115 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36554320 |
atcaggatcttcctagtaataggaaagattaatcaaaaaagttatactcaaaatgtgtgtaactacaacatacagttgctctggacagaaatgactctat |
36554419 |
T |
|
| Q |
116 |
aaaacacgacagagaattagaaatcattgtgatctagcatcactggctttcaaatatggtaacaataacattatcgaccgtctaagaaaagtgagaaaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36554420 |
aaaacacgacagagaattagaaatcattgtgatctagcatcactggctttcaaatatggtaacaataacattatcgaccgtctaagaaaaatgagaaaag |
36554519 |
T |
|
| Q |
216 |
aacacgcctaacaaatgtataggaaaaagttatacttattaaatcttaccttgatggcaagcttttcatctacgtatttacaagcttctcgcatagcaag |
315 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36554520 |
aacacgcctaacaaatgtataggaaaaaggtatacttattaaatcttaccttgacggcaagcttttcatctacgtatttacaagcttctcgcatagcaag |
36554619 |
T |
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| Q |
316 |
ctattcagaacaatcaacacagataagtt |
344 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
36554620 |
ctattcagaacaatcaacacagataagtt |
36554648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 200 - 344
Target Start/End: Complemental strand, 2857919 - 2857775
Alignment:
| Q |
200 |
agaaaagtgagaaaagaacacgcctaacaaatgtataggaaaaagttatacttattaaatcttaccttgatggcaagcttttcatctacgtatttacaag |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| |||||||||||| ||| |||||||||| | |
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| T |
2857919 |
agaaaagtgagaaaagaacacgcctaacaaatgtataggaaaatggtatacttgagaaatcttaccttgacggcaagcttttcgtctccgtatttacagg |
2857820 |
T |
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| Q |
300 |
cttctcgcatagcaagctattcagaacaatcaacacagataagtt |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2857819 |
cttctcgcatagcaagctattcagaacaatcaacacagattagtt |
2857775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 2858026 - 2857923
Alignment:
| Q |
16 |
atcaggatgttcctagtaataggaaagattaatcaaaaaagttatactcaaaatgtgtgtaactacaacatacagttgctctggacagaaatgactcaat |
115 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| | |||||||||| |||||||||||||| ||||||||| || |
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| T |
2858026 |
atcaggatgttcctagtaataggaaaaattaatcaaaaaa-ttatactcaaaatgtgtagagctacaacataaagttgctctggacataaatgactccat |
2857928 |
T |
|
| Q |
116 |
aaaac |
120 |
Q |
| |
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||||| |
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|
| T |
2857927 |
aaaac |
2857923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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