View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16943_low_4 (Length: 720)
Name: NF16943_low_4
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 212 - 703
Target Start/End: Complemental strand, 35006388 - 35005898
Alignment:
| Q |
212 |
gggtcttccatacatctatcacacttaatactagaagtcatcatcaacattatgactctttcttcaattgtgagaagtcttccatgaacagttttccaca |
311 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35006388 |
gggtcttccatacatctatcacacttgatactacaagtcatcatcaacattatgactctttattcaattgtgagaagtcttccatgaacagttttccaca |
35006289 |
T |
|
| Q |
312 |
aagtatatctaattctagttggtcccttacacttccaatttttgccaaaggaattcaaactatcctcgctattaattctattacttagcatctcatatgt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35006288 |
aagtatatctaattctagttggtcccttacacttccaatttttgtcaaaggaattcaaacaatcctcgctattaattctattacttagcatctcatatgt |
35006189 |
T |
|
| Q |
412 |
agtttttatgaagaattctccattagaagcttgattctgatggggcacgtccgaggtgtcaggggaaggagattgaacaagatcaataacttgattcata |
511 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35006188 |
agtttttatgaagaattctccattaaaagcttgattctgatggggcacgtccgaggtgtc-ggggaaggaggttgaacaagatcaataacttgattcata |
35006090 |
T |
|
| Q |
512 |
tacatcaaaaatatatctcaaaattcgatcccaattctatcccgtactattgctataaaatgctataggattagtaattttaatgggaggacaagagtac |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35006089 |
tacatcaaaaatatatctcaaaattcgatcccaattccatcccgtactattgctataaaatgctataggattagtaattttaatggtaggacaagagtac |
35005990 |
T |
|
| Q |
612 |
caaattggtcttcaagattagcatattgcatacaccaggatccaagcctctttccaaaatatgatggtgttttcatccttaaatatctaaaa |
703 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35005989 |
caaattggtcttcaagattagcatattgcataccccaggatccaagcctttttccaaaatatgatggtgttttcatccttaaatatctaaaa |
35005898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 35006636 - 35006436
Alignment:
| Q |
19 |
gagttagtgaaacacaccttcgggatactttcgctaaacattttgtcgctataaatatctttt---------------------aaaagtataatgaaat |
97 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35006636 |
gagttagtgaaacacacgttcggaatactttcgctaaacattttgtcgctataaatatcttttcccatttgtaaattgatatgtaaaagtataatgaaat |
35006537 |
T |
|
| Q |
98 |
aaattaacctaggaaggccccaataatatgaagacagacaaatcctaatgtagaatagtattaag--tgtgatggatgtatggaagacctaaaatcaatt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |||||||||||||| |||||||||| |
|
|
| T |
35006536 |
aaattaacctaggaaggccccaataatatgaagacagacaaatcctaatgtagactactattaagtgtgtgatagatgtatggaagactcaaaatcaatt |
35006437 |
T |
|
| Q |
196 |
t |
196 |
Q |
| |
|
| |
|
|
| T |
35006436 |
t |
35006436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 294 - 459
Target Start/End: Complemental strand, 16882896 - 16882728
Alignment:
| Q |
294 |
catgaacagttttccacaaagtatatctaattctagttggtcccttacacttccaatttttgccaaa-gga--attcaaactatcctcgctattaattct |
390 |
Q |
| |
|
||||| || ||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||| || || || | | ||||| |||||| || | |
|
|
| T |
16882896 |
catgagcaattttccacaaagtggctctaattctagttggtcccttccacttccaacctttgtcaaatagaagatccagattgtcctcactattatttat |
16882797 |
T |
|
| Q |
391 |
attacttagcatctcatatgtagtttttatgaagaattctccattagaagcttgattctgatggggcac |
459 |
Q |
| |
|
| |||| ||||||||||||| | |||||||| |||| | |||||| |||||| ||||| ||||||||| |
|
|
| T |
16882796 |
agtactcagcatctcatatgcactttttatggagaactatccattggaagctagattcaaatggggcac |
16882728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 35006356 - 35006399
Alignment:
| Q |
153 |
tagtattaagtgtgatggatgtatggaagacctaaaatcaattt |
196 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
35006356 |
tagtatcaagtgtgatagatgtatggaagacccaaaatcaattt |
35006399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 636
Target Start/End: Original strand, 14591033 - 14591070
Alignment:
| Q |
599 |
aggacaagagtaccaaattggtcttcaagattagcata |
636 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
14591033 |
aggacaagaggaccaaattggtcttcaagactagcata |
14591070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 582
Target Start/End: Original strand, 44103133 - 44103237
Alignment:
| Q |
477 |
aaggagattgaacaagatcaataacttgattcatatacatcaaaaatatatctcaaaattcgatcccaattctatcccgtactattgctataaaatgcta |
576 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||| | ||||||||| |||||| | |||||||| ||||| ||||| | ||||||||||| |
|
|
| T |
44103133 |
aaggaggttgaacaagatcaataacttcattcatatacat-atgaatatatctaaaaatttgctcccaatttcatcccaagctattaccataaaatgcta |
44103231 |
T |
|
| Q |
577 |
taggat |
582 |
Q |
| |
|
||||| |
|
|
| T |
44103232 |
caggat |
44103237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 3974614 - 3974661
Alignment:
| Q |
13 |
aatattgagttagtgaaacacaccttcgggatactttcgctaaacatt |
60 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| |||||||||||||| |
|
|
| T |
3974614 |
aatattgagttagtgaaacacacattcgagatattttcgctaaacatt |
3974661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University