View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_40 (Length: 344)
Name: NF16943_low_40
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 3 - 330
Target Start/End: Complemental strand, 34092279 - 34091949
Alignment:
| Q |
3 |
aaaataatcttctaattatttttattttaatatatggcaaaagagctctatatctttacaaagactagttgaaaggaaataatgtggctttaaatttcaa |
102 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34092279 |
aaaataatcttctaattatttttattttaatatatagcaaaagagctctatatctttacaaagactagttgaaaggaaattatgtggctttaaatttcaa |
34092180 |
T |
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| Q |
103 |
aatcaacacattttttcctataaaaacaccattatttatttctataattaatgctaacttgtgatcatgagaggagtaaaataattcttcccccaactaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34092179 |
aatcaacacattttttcctataaaaacaccattatttatttctataattaatgctaacttgtgatcatgagaggagtaaaataattcttcccccaactaa |
34092080 |
T |
|
| Q |
203 |
tacctctctgatgtcaaaaccactttaccctttaagcacttaaaagttctatcattaaagttaaccattatggtaacctaatcatcatgcaaaaataaa- |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34092079 |
tacctctctgatgtcaaaaccactttaccctttaagcacttaaaagttctatcattaaagttaaccattatggtaacctaatcatcatgccaaaataaat |
34091980 |
T |
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| Q |
302 |
--tactagataagataagtacaagagagggg |
330 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34091979 |
agtactagataagataagtacaagagagggg |
34091949 |
T |
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