View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16943_low_41 (Length: 341)

Name: NF16943_low_41
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16943_low_41
NF16943_low_41
[»] chr6 (15 HSPs)
chr6 (84-280)||(5741804-5742000)
chr6 (12-69)||(5742056-5742113)
chr6 (278-317)||(22400786-22400825)
chr6 (276-321)||(30388699-30388744)
chr6 (285-321)||(364761-364797)
chr6 (278-318)||(3849045-3849085)
chr6 (278-318)||(17835873-17835913)
chr6 (278-317)||(9838344-9838383)
chr6 (278-317)||(17193138-17193177)
chr6 (278-317)||(24635688-24635727)
chr6 (278-317)||(26470945-26470984)
chr6 (272-317)||(23777270-23777315)
chr6 (278-315)||(23923937-23923974)
chr6 (285-321)||(24663366-24663402)
chr6 (278-318)||(31854712-31854752)
[»] chr3 (17 HSPs)
chr3 (276-321)||(20105170-20105215)
chr3 (278-321)||(790530-790573)
chr3 (274-317)||(7328431-7328474)
chr3 (278-316)||(36371058-36371096)
chr3 (278-316)||(41425609-41425647)
chr3 (285-321)||(43554377-43554413)
chr3 (278-318)||(48214047-48214087)
chr3 (278-317)||(17102734-17102773)
chr3 (285-316)||(39867076-39867107)
chr3 (285-316)||(40319156-40319187)
chr3 (283-318)||(48151970-48152005)
chr3 (278-317)||(53745508-53745547)
chr3 (278-320)||(13167996-13168038)
chr3 (278-316)||(32980620-32980658)
chr3 (272-318)||(54898312-54898358)
chr3 (285-317)||(33491366-33491398)
chr3 (285-321)||(55141696-55141732)
[»] chr4 (34 HSPs)
chr4 (277-321)||(31862204-31862248)
chr4 (276-316)||(22828624-22828664)
chr4 (278-321)||(36408706-36408749)
chr4 (278-321)||(36422872-36422915)
chr4 (272-318)||(29295331-29295377)
chr4 (278-316)||(42099691-42099729)
chr4 (284-317)||(31984323-31984356)
chr4 (278-318)||(3436288-3436328)
chr4 (277-321)||(12252082-12252126)
chr4 (269-313)||(22678536-22678580)
chr4 (278-318)||(56576324-56576364)
chr4 (278-317)||(4201540-4201579)
chr4 (278-317)||(16664224-16664263)
chr4 (278-321)||(19527426-19527469)
chr4 (278-317)||(29833148-29833187)
chr4 (278-317)||(37502004-37502043)
chr4 (278-317)||(38617529-38617568)
chr4 (285-316)||(53125461-53125492)
chr4 (283-321)||(23623713-23623751)
chr4 (283-321)||(27492347-27492385)
chr4 (275-313)||(46871901-46871939)
chr4 (283-321)||(47596831-47596869)
chr4 (278-311)||(18135278-18135311)
chr4 (284-321)||(33809076-33809113)
chr4 (285-318)||(42513247-42513280)
chr4 (284-317)||(44217695-44217728)
chr4 (278-311)||(49122488-49122521)
chr4 (278-311)||(52061546-52061579)
chr4 (278-318)||(32239383-32239423)
chr4 (277-321)||(33755300-33755344)
chr4 (278-318)||(44069014-44069054)
chr4 (285-317)||(47751527-47751559)
chr4 (278-318)||(50623397-50623437)
chr4 (278-318)||(53600007-53600047)
[»] chr5 (25 HSPs)
chr5 (278-321)||(28447198-28447241)
chr5 (275-321)||(42911509-42911555)
chr5 (278-321)||(4175694-4175737)
chr5 (283-321)||(10889308-10889346)
chr5 (278-315)||(4985394-4985431)
chr5 (285-321)||(31802758-31802794)
chr5 (283-315)||(36239424-36239456)
chr5 (278-317)||(1795335-1795374)
chr5 (278-317)||(7579886-7579925)
chr5 (286-321)||(18465671-18465706)
chr5 (278-317)||(21606476-21606515)
chr5 (278-317)||(28463603-28463642)
chr5 (278-317)||(38297835-38297874)
chr5 (278-317)||(38503018-38503057)
chr5 (278-317)||(40198750-40198789)
chr5 (283-317)||(25027942-25027976)
chr5 (288-318)||(28024476-28024506)
chr5 (276-310)||(30368340-30368374)
chr5 (284-321)||(1297952-1297989)
chr5 (278-315)||(3686356-3686393)
chr5 (284-317)||(4427624-4427657)
chr5 (285-317)||(6007852-6007884)
chr5 (285-321)||(25343929-25343965)
chr5 (277-317)||(26854312-26854352)
chr5 (285-321)||(38363160-38363196)
[»] chr8 (20 HSPs)
chr8 (276-316)||(2888690-2888730)
chr8 (278-318)||(23848776-23848816)
chr8 (278-321)||(14263524-14263567)
chr8 (278-321)||(23429889-23429932)
chr8 (278-317)||(43553464-43553503)
chr8 (278-316)||(15596324-15596362)
chr8 (278-318)||(9954629-9954669)
chr8 (284-316)||(15281379-15281411)
chr8 (284-316)||(15461748-15461780)
chr8 (283-318)||(16701113-16701148)
chr8 (283-318)||(38128760-38128795)
chr8 (285-318)||(13327766-13327799)
chr8 (283-316)||(18842515-18842548)
chr8 (284-317)||(27518928-27518961)
chr8 (284-317)||(36058219-36058252)
chr8 (278-318)||(167697-167737)
chr8 (285-317)||(12763422-12763454)
chr8 (278-318)||(16656681-16656721)
chr8 (277-317)||(39303737-39303777)
chr8 (278-318)||(43553020-43553060)
[»] chr2 (14 HSPs)
chr2 (278-321)||(14295977-14296020)
chr2 (278-321)||(28145792-28145835)
chr2 (276-318)||(34357156-34357198)
chr2 (278-318)||(10812179-10812219)
chr2 (278-317)||(11222540-11222579)
chr2 (278-321)||(13753935-13753978)
chr2 (278-321)||(14288411-14288454)
chr2 (278-317)||(26342560-26342599)
chr2 (278-317)||(32674191-32674230)
chr2 (278-317)||(34399182-34399221)
chr2 (283-321)||(25558403-25558441)
chr2 (283-317)||(37093435-37093469)
chr2 (278-318)||(14541311-14541351)
chr2 (285-321)||(36405062-36405098)
[»] chr1 (18 HSPs)
chr1 (278-317)||(31570855-31570894)
chr1 (278-316)||(17013402-17013440)
chr1 (284-321)||(37609515-37609552)
chr1 (278-318)||(28679001-28679041)
chr1 (278-318)||(35531512-35531552)
chr1 (281-317)||(45226795-45226831)
chr1 (278-317)||(1677196-1677235)
chr1 (283-318)||(19093253-19093288)
chr1 (278-317)||(19929684-19929723)
chr1 (283-318)||(32347963-32347998)
chr1 (278-317)||(37296943-37296982)
chr1 (278-317)||(50825790-50825829)
chr1 (275-317)||(35255463-35255505)
chr1 (278-316)||(40926962-40927000)
chr1 (272-317)||(8464667-8464712)
chr1 (289-321)||(7782942-7782974)
chr1 (278-310)||(32994698-32994730)
chr1 (278-318)||(44182740-44182780)
[»] chr7 (14 HSPs)
chr7 (277-315)||(3310195-3310233)
chr7 (275-317)||(47408115-47408157)
chr7 (278-318)||(12838301-12838341)
chr7 (278-318)||(17896746-17896786)
chr7 (278-318)||(35112409-35112449)
chr7 (278-318)||(44480365-44480405)
chr7 (278-321)||(7477418-7477461)
chr7 (278-317)||(18470287-18470326)
chr7 (278-317)||(32966273-32966312)
chr7 (278-325)||(33921990-33922037)
chr7 (278-321)||(41675406-41675449)
chr7 (275-317)||(33100057-33100099)
chr7 (283-316)||(45324013-45324046)
chr7 (285-321)||(8264934-8264970)
[»] scaffold0018 (1 HSPs)
scaffold0018 (278-317)||(184349-184388)
[»] scaffold0014 (1 HSPs)
scaffold0014 (278-321)||(195956-195999)
[»] scaffold0002 (1 HSPs)
scaffold0002 (278-320)||(138950-138992)
[»] scaffold0001 (1 HSPs)
scaffold0001 (283-317)||(419856-419890)
[»] scaffold0172 (1 HSPs)
scaffold0172 (285-318)||(26348-26381)
[»] scaffold1213 (1 HSPs)
scaffold1213 (278-310)||(200-232)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 5e-90; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 84 - 280
Target Start/End: Complemental strand, 5742000 - 5741804
Alignment:
Q  84 aaatgcaactgcaagcatctttagtagtataaggtnnnnnnngcatattgtactcaaaacaaagcatgttgtgtcttgactatttctttggttctggtgt 183  Q
    |||||||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5742000 aaatgcaactgcaagcatctttagtagtgtaaggtaaaaaaagcatattgtactcaaaacaaagcatgttgtgtcttgactatttctttggttctggtgt 5741901  T
Q  184 cttgacttttatttattacaggttagtaaaacgaactaaattattcattaactcattatttatggttaatttgttactacatgacactaacaactac 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5741900 cttgacttttatttattacaggttagtaaaacgaactaaattattcattaactcattatttatggttaatttgttactacatgacactaacagctac 5741804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 5742113 - 5742056
Alignment:
Q  12 agaatcaacgatattcttgaaatatttataattctgaagcatacaacaaaatcagaga 69  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5742113 agaatcaacgatattcttgaaatatttataattctaaagcatacaacaaaatcagaga 5742056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 22400825 - 22400786
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22400825 tactacctccgttcctttttaagtgtctcttttggagaaa 22400786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 321
Target Start/End: Original strand, 30388699 - 30388744
Alignment:
Q  276 actactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||||| |||||||||||||||||||||| |||||| |||||||||    
T  30388699 actactccctccgttcctttttaagtgtcacttttgaagaaaattt 30388744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 364797 - 364761
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||||||||||||||||||| ||||||||||||||||    
T  364797 tccgttcctttttaagtgtcacttttggagaaaattt 364761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 3849045 - 3849085
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  3849045 tactccctccgttcctttttaagtgtcacttttggagaaaa 3849085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 17835873 - 17835913
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  17835873 tactccctccgttcctttttaagtgtcacttttggagaaaa 17835913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 9838383 - 9838344
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  9838383 tactccctccgttcctttttaagtgtcacttttggagaaa 9838344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 17193138 - 17193177
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  17193138 tactccctccgttcctttttaagtgtcacttttggagaaa 17193177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 24635688 - 24635727
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  24635688 tactccctccgttcctttttaagtgtcccttttggagaaa 24635727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 26470984 - 26470945
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  26470984 tactccctccgttcctttttaagtgtctcttttgaagaaa 26470945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 23777270 - 23777315
Alignment:
Q  272 aacaactactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    ||||| |||| ||||||||||||||||||||||  |||||||||||    
T  23777270 aacaagtactccctccgttcctttttaagtgtcaattttggagaaa 23777315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 23923974 - 23923937
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggaga 315  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  23923974 tactccctccgttcctttttaagtgtcacttttggaga 23923937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 24663366 - 24663402
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    ||||||||||||||||| || ||||||||||||||||    
T  24663366 tccgttcctttttaagtatcacttttggagaaaattt 24663402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 31854752 - 31854712
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||||||||||||||||  |||||||||||||    
T  31854752 tactccctccgttcctttttaagtgttacttttggagaaaa 31854712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 276 - 321
Target Start/End: Original strand, 20105170 - 20105215
Alignment:
Q  276 actactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  20105170 actactacctccgttcctttttaagtgtcacttttggagaaaattt 20105215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 790530 - 790573
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||| |||||||||||||||||||||| ||||||||||||||||    
T  790530 tactccctccgttcctttttaagtgtcacttttggagaaaattt 790573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 317
Target Start/End: Original strand, 7328431 - 7328474
Alignment:
Q  274 caactactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||||||| | |||||||||||||||||||||||||||||||||    
T  7328431 caactactccttccgttcctttttaagtgtctcttttggagaaa 7328474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 316
Target Start/End: Complemental strand, 36371096 - 36371058
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaa 316  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  36371096 tactccctccgttcctttttaagtgtctcttttggagaa 36371058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 316
Target Start/End: Original strand, 41425609 - 41425647
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaa 316  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  41425609 tactccctccgttcctttttaagtgtctcttttggagaa 41425647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 43554377 - 43554413
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||||||||||||||||||| ||||||||||||||||    
T  43554377 tccgttcctttttaagtgtcacttttggagaaaattt 43554413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 48214047 - 48214087
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  48214047 tactccctccgttcctttttaagtgtcacttttggagaaaa 48214087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 17102734 - 17102773
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  17102734 tactccctccgttcttttttaagtgtctcttttggagaaa 17102773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 316
Target Start/End: Complemental strand, 39867107 - 39867076
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaa 316  Q
    ||||||||||||||||||||||||||||||||    
T  39867107 tccgttcctttttaagtgtctcttttggagaa 39867076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 316
Target Start/End: Complemental strand, 40319187 - 40319156
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaa 316  Q
    ||||||||||||||||||||||||||||||||    
T  40319187 tccgttcctttttaagtgtctcttttggagaa 40319156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 318
Target Start/End: Original strand, 48151970 - 48152005
Alignment:
Q  283 cctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||||||||||||||||||||| |||||||||||||    
T  48151970 cctccgttcctttttaagtgtcacttttggagaaaa 48152005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 53745547 - 53745508
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  53745547 tactccctccgttcctttttaagtgtcacttttggagaaa 53745508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 13167996 - 13168038
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaatt 320  Q
    |||| |||||||||||||||||||||| ||||| |||||||||    
T  13167996 tactccctccgttcctttttaagtgtcacttttagagaaaatt 13168038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 316
Target Start/End: Original strand, 32980620 - 32980658
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaa 316  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  32980620 tactccctccgttcttttttaagtgtctcttttggagaa 32980658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 54898358 - 54898312
Alignment:
Q  272 aacaactactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    ||||| |||| |||| ||||||||||||||||| |||||||||||||    
T  54898358 aacaattactccctctgttcctttttaagtgtcacttttggagaaaa 54898312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 33491398 - 33491366
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaaa 317  Q
    ||||||||||||||||||||||||||| |||||    
T  33491398 tccgttcctttttaagtgtctcttttgaagaaa 33491366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 55141732 - 55141696
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  55141732 tccgtttctttttaagtgtcacttttggagaaaattt 55141696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 31862248 - 31862204
Alignment:
Q  277 ctactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  31862248 ctactccctccgttcctttttaagtgtctcttttggagaaaattt 31862204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 22828664 - 22828624
Alignment:
Q  276 actactacctccgttcctttttaagtgtctcttttggagaa 316  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  22828664 actactccctccgttcctttttaagtgtctcttttggagaa 22828624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 36408706 - 36408749
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||| |||||||||||||||||||||| ||||||||||||||||    
T  36408706 tactccctccgttcctttttaagtgtcacttttggagaaaattt 36408749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 36422872 - 36422915
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||| |||||||||||||||||||||| ||||||||||||||||    
T  36422872 tactccctccgttcctttttaagtgtcacttttggagaaaattt 36422915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 29295331 - 29295377
Alignment:
Q  272 aacaactactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||||||||| ||||| |||||||||||||||| |||||||||||||    
T  29295331 aacaactactccctcctttcctttttaagtgtcacttttggagaaaa 29295377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 316
Target Start/End: Original strand, 42099691 - 42099729
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaa 316  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  42099691 tactccctccgttcctttttaagtgtctcttttggagaa 42099729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 31984356 - 31984323
Alignment:
Q  284 ctccgttcctttttaagtgtctcttttggagaaa 317  Q
    ||||||||||||||||||||||||||||||||||    
T  31984356 ctccgttcctttttaagtgtctcttttggagaaa 31984323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 3436328 - 3436288
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  3436328 tactccctccgttcctttttaagtgtcacttttggagaaaa 3436288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 12252082 - 12252126
Alignment:
Q  277 ctactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    ||||| |||||||||||||||||||||| |||||| |||||||||    
T  12252082 ctactccctccgttcctttttaagtgtcacttttgaagaaaattt 12252126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 22678580 - 22678536
Alignment:
Q  269 actaacaactactacctccgttcctttttaagtgtctcttttgga 313  Q
    ||||||||||||| |||| ||||||||||||||||| ||||||||    
T  22678580 actaacaactactccctcagttcctttttaagtgtcacttttgga 22678536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 56576364 - 56576324
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  56576364 tactccctccgttcctttttaagtgtcacttttggagaaaa 56576324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 4201579 - 4201540
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  4201579 tactccctccgttcctttttaagtgtctcttttgaagaaa 4201540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 16664224 - 16664263
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  16664224 tactccctccgttcctttttaagtgtcacttttggagaaa 16664263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 19527469 - 19527426
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||| |||||||| ||||||||||||| ||||||||||||||||    
T  19527469 tactccctccgtttctttttaagtgtcacttttggagaaaattt 19527426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 29833187 - 29833148
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  29833187 tacttcctccgttcatttttaagtgtctcttttggagaaa 29833148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 37502004 - 37502043
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  37502004 tactccctccgttcctttttaagtgtcacttttggagaaa 37502043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 38617568 - 38617529
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  38617568 tactccctccgttcctttttaagtgtcacttttggagaaa 38617529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 316
Target Start/End: Complemental strand, 53125492 - 53125461
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaa 316  Q
    ||||||||||||||||||||||||||||||||    
T  53125492 tccgttcctttttaagtgtctcttttggagaa 53125461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 23623751 - 23623713
Alignment:
Q  283 cctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  23623751 cctccgttcctttttaagtgtcactttttgagaaaattt 23623713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 321
Target Start/End: Original strand, 27492347 - 27492385
Alignment:
Q  283 cctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  27492347 cctccgtttctttttaagtgtcacttttggagaaaattt 27492385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 46871901 - 46871939
Alignment:
Q  275 aactactacctccgttcctttttaagtgtctcttttgga 313  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  46871901 aactacttcctccgttcctttttaagtgtcacttttgga 46871939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 47596869 - 47596831
Alignment:
Q  283 cctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  47596869 cctccgtttctttttaagtgtctcttttgtagaaaattt 47596831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 18135311 - 18135278
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttg 311  Q
    |||| |||||||||||||||||||||||||||||    
T  18135311 tactccctccgttcctttttaagtgtctcttttg 18135278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 321
Target Start/End: Original strand, 33809076 - 33809113
Alignment:
Q  284 ctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  33809076 ctccgttcctttttaattgtcacttttggagaaaattt 33809113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 318
Target Start/End: Complemental strand, 42513280 - 42513247
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||||||||||||||||||| |||||||||||||    
T  42513280 tccgttcctttttaagtgtcacttttggagaaaa 42513247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 44217695 - 44217728
Alignment:
Q  284 ctccgttcctttttaagtgtctcttttggagaaa 317  Q
    ||||||||||||||||||||| ||||||||||||    
T  44217695 ctccgttcctttttaagtgtcacttttggagaaa 44217728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 49122521 - 49122488
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttg 311  Q
    |||| |||||||||||||||||||||||||||||    
T  49122521 tactccctccgttcctttttaagtgtctcttttg 49122488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 52061546 - 52061579
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttg 311  Q
    |||| |||||||||||||||||||||||||||||    
T  52061546 tactccctccgttcctttttaagtgtctcttttg 52061579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 32239383 - 32239423
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| ||||||||||||||||| |||| |||||||||||||    
T  32239383 tactccctccgttcctttttaaatgtcacttttggagaaaa 32239423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 33755344 - 33755300
Alignment:
Q  277 ctactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    ||||| ||| |||||||||||||||||| ||||| ||||||||||    
T  33755344 ctactcccttcgttcctttttaagtgtcacttttagagaaaattt 33755300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 44069014 - 44069054
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||||||||||||||||| |||||| ||||||    
T  44069014 tactccctccgttcctttttaagtgtcacttttgtagaaaa 44069054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 47751527 - 47751559
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||||||||||||||||||| ||||||||||||    
T  47751527 tccgttcctttttaagtgtcacttttggagaaa 47751559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 50623397 - 50623437
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||||||||||||||||| |||| ||||||||    
T  50623397 tactccctccgttcctttttaagtgtcactttaggagaaaa 50623437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 53600047 - 53600007
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| ||||||||||||||||||||||  ||||||||||||    
T  53600047 tactccctccgttcctttttaagtgtcatttttggagaaaa 53600007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 28447241 - 28447198
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  28447241 tactccctccgttcctttttaagtgtctcttttggagaaaattt 28447198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 42911509 - 42911555
Alignment:
Q  275 aactactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  42911509 aactactccctccgtttctttttaagtgtctcttttggagaaaattt 42911555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 4175737 - 4175694
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||| |||||||||||||||||||||| ||||||||||||||||    
T  4175737 tactccctccgttcctttttaagtgtcacttttggagaaaattt 4175694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 10889346 - 10889308
Alignment:
Q  283 cctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  10889346 cctccgttcctttttaagtgtcacttttggagaaaattt 10889308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 4985431 - 4985394
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggaga 315  Q
    |||| |||||||||||||||||||||||||||||||||    
T  4985431 tactccctccgttcctttttaagtgtctcttttggaga 4985394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 31802758 - 31802794
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||||| ||||||||||||||||||||||||||||||    
T  31802758 tccgtttctttttaagtgtctcttttggagaaaattt 31802794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 36239424 - 36239456
Alignment:
Q  283 cctccgttcctttttaagtgtctcttttggaga 315  Q
    |||||||||||||||||||||||||||||||||    
T  36239424 cctccgttcctttttaagtgtctcttttggaga 36239456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 1795374 - 1795335
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  1795374 tactccctccgttcctttttaagtgtcacttttggagaaa 1795335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 7579925 - 7579886
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  7579925 tactccctccgttcctttttaagtgtcacttttggagaaa 7579886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 321
Target Start/End: Original strand, 18465671 - 18465706
Alignment:
Q  286 ccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    ||||||||||||||||||| ||||||||||||||||    
T  18465671 ccgttcctttttaagtgtcacttttggagaaaattt 18465706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 21606515 - 21606476
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  21606515 tactccctccgttcctttttaaatgtctcttttggagaaa 21606476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 28463642 - 28463603
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  28463642 tactccctccgttcctttttaagtgtcacttttggagaaa 28463603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 38297874 - 38297835
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  38297874 tactccctccgttcctttttaagtgtcacttttggagaaa 38297835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 38503057 - 38503018
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  38503057 tactccctccgttcctttttaagtgtctcttttgaagaaa 38503018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 40198750 - 40198789
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  40198750 tacttcctctgttcctttttaagtgtctcttttggagaaa 40198789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 317
Target Start/End: Complemental strand, 25027976 - 25027942
Alignment:
Q  283 cctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||||||||||||||||||||| ||||||||||||    
T  25027976 cctccgttcctttttaagtgtcacttttggagaaa 25027942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 318
Target Start/End: Complemental strand, 28024506 - 28024476
Alignment:
Q  288 gttcctttttaagtgtctcttttggagaaaa 318  Q
    |||||||||||||||||||||||||||||||    
T  28024506 gttcctttttaagtgtctcttttggagaaaa 28024476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 310
Target Start/End: Complemental strand, 30368374 - 30368340
Alignment:
Q  276 actactacctccgttcctttttaagtgtctctttt 310  Q
    |||||| ||||||||||||||||||||||||||||    
T  30368374 actactccctccgttcctttttaagtgtctctttt 30368340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 1297989 - 1297952
Alignment:
Q  284 ctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  1297989 ctccgttcttttttaagtgtcacttttggagaaaattt 1297952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 3686356 - 3686393
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggaga 315  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  3686356 tactccctccgttcctttttaagtgtcacttttggaga 3686393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 4427657 - 4427624
Alignment:
Q  284 ctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||||||||||||||||||| |||||||||||||    
T  4427657 ctccgttcctttttaagtgtttcttttggagaaa 4427624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 6007852 - 6007884
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||||||||||||||||||| ||||||||||||    
T  6007852 tccgttcctttttaagtgtcacttttggagaaa 6007884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 25343929 - 25343965
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  25343929 tccgttcctttgtaagtgtcacttttggagaaaattt 25343965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 26854352 - 26854312
Alignment:
Q  277 ctactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    ||||| |||| ||||||||||||||||| ||||||||||||    
T  26854352 ctactccctctgttcctttttaagtgtcacttttggagaaa 26854312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 38363160 - 38363196
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||||||||||||||||||  ||||||||||||||||    
T  38363160 tccgttcctttttaagtgttacttttggagaaaattt 38363196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 2888730 - 2888690
Alignment:
Q  276 actactacctccgttcctttttaagtgtctcttttggagaa 316  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  2888730 actactccctccgttcctttttaagtgtctcttttggagaa 2888690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 23848816 - 23848776
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  23848816 tactacctccgttcctttttaagtgtcacttttggagaaaa 23848776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 14263524 - 14263567
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||| |||||||||||||||||||||| ||||||||||||||||    
T  14263524 tactccctccgttcctttttaagtgtcacttttggagaaaattt 14263567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 23429889 - 23429932
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||| |||||||||||||||||||||| ||||||||||||||||    
T  23429889 tactccctccgttcctttttaagtgtcacttttggagaaaattt 23429932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 43553503 - 43553464
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  43553503 tactccctccgttcctttttaagtgtctcttttggagaaa 43553464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 316
Target Start/End: Original strand, 15596324 - 15596362
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaa 316  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  15596324 tactccctccgttcctttttaagtgtctcttttggagaa 15596362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 9954629 - 9954669
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  9954629 tacttcctccgttcctttttaagtgtcacttttggagaaaa 9954669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 15281379 - 15281411
Alignment:
Q  284 ctccgttcctttttaagtgtctcttttggagaa 316  Q
    |||||||||||||||||||||||||||||||||    
T  15281379 ctccgttcctttttaagtgtctcttttggagaa 15281411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 15461748 - 15461780
Alignment:
Q  284 ctccgttcctttttaagtgtctcttttggagaa 316  Q
    |||||||||||||||||||||||||||||||||    
T  15461748 ctccgttcctttttaagtgtctcttttggagaa 15461780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 318
Target Start/End: Complemental strand, 16701148 - 16701113
Alignment:
Q  283 cctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||||||||||||||||||||| |||||||||||||    
T  16701148 cctccgttcctttttaagtgtcacttttggagaaaa 16701113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 318
Target Start/End: Complemental strand, 38128795 - 38128760
Alignment:
Q  283 cctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||||||||||||||||||||| |||||||||||||    
T  38128795 cctccgttcctttttaagtgtcacttttggagaaaa 38128760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 318
Target Start/End: Original strand, 13327766 - 13327799
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||||||||||||||||||| |||||||||||||    
T  13327766 tccgttcctttttaagtgtcacttttggagaaaa 13327799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 316
Target Start/End: Original strand, 18842515 - 18842548
Alignment:
Q  283 cctccgttcctttttaagtgtctcttttggagaa 316  Q
    |||||||||||||||||||||| |||||||||||    
T  18842515 cctccgttcctttttaagtgtcacttttggagaa 18842548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 27518961 - 27518928
Alignment:
Q  284 ctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||||||||||||||||||||||||||| |||||    
T  27518961 ctccgttcctttttaagtgtctcttttgaagaaa 27518928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 36058219 - 36058252
Alignment:
Q  284 ctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||||||||||||||||||||||||||| |||||    
T  36058219 ctccgttcctttttaagtgtctcttttgaagaaa 36058252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 167737 - 167697
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||| ||||||||||||| |||||||||||||    
T  167737 tactccctccgtttctttttaagtgtcacttttggagaaaa 167697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 12763422 - 12763454
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||||||||||||||||||| ||||||||||||    
T  12763422 tccgttcctttttaagtgtcacttttggagaaa 12763454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 16656681 - 16656721
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||| ||||||||||||| |||||||||||||    
T  16656681 tactccctccgtttctttttaagtgtcacttttggagaaaa 16656721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 39303777 - 39303737
Alignment:
Q  277 ctactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    ||||| ||||||||||||||||||||||  |||||||||||    
T  39303777 ctactccctccgttcctttttaagtgtcatttttggagaaa 39303737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 43553020 - 43553060
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||||||||||||||||| |||||||| ||||    
T  43553020 tactccctccgttcctttttaagtgtcacttttggaaaaaa 43553060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 14296020 - 14295977
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||| |||||||||||||||||||||| ||||||||||||||||    
T  14296020 tactccctccgttcctttttaagtgtcacttttggagaaaattt 14295977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 28145835 - 28145792
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||| |||||||||||||||||||||| ||||||||||||||||    
T  28145835 tacttcctccgttcctttttaagtgtcacttttggagaaaattt 28145792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 34357156 - 34357198
Alignment:
Q  276 actactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||||| |||||||||||||||||||||| |||||||||||||    
T  34357156 actactccctccgttcctttttaagtgtcacttttggagaaaa 34357198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 10812179 - 10812219
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  10812179 tactccctccgttcctttttaagtgtcacttttggagaaaa 10812219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 11222579 - 11222540
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  11222579 tactccctccgttcctttttaagtgtctcttttgaagaaa 11222540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 13753935 - 13753978
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||| ||| |||||||||||||||||||||||||||||| ||||    
T  13753935 tactcccttcgttcctttttaagtgtctcttttggagaacattt 13753978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 321
Target Start/End: Original strand, 14288411 - 14288454
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||| |||||||| ||||||||||||| ||||||||||||||||    
T  14288411 tactccctccgtttctttttaagtgtcacttttggagaaaattt 14288454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 26342560 - 26342599
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  26342560 tactccctccgttcctttttaagtgtcacttttggagaaa 26342599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 32674191 - 32674230
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  32674191 tactccctccgttcctttttaagtgtcacttttggagaaa 32674230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 34399182 - 34399221
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  34399182 tactccctccgttcctttttaagtgtcacttttggagaaa 34399221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 25558441 - 25558403
Alignment:
Q  283 cctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  25558441 cctccgtttctttttaagtgtcacttttggagaaaattt 25558403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 317
Target Start/End: Original strand, 37093435 - 37093469
Alignment:
Q  283 cctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||||||||||||||||||||| ||||||||||||    
T  37093435 cctccgttcctttttaagtgtcacttttggagaaa 37093469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 14541311 - 14541351
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| ||||||||||||||||| |||| |||||||||||||    
T  14541311 tactccctccgttcctttttaaatgtcacttttggagaaaa 14541351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 36405098 - 36405062
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  36405098 tccgttcatttttaagtgtctcttttgaagaaaattt 36405062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 31570894 - 31570855
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  31570894 tactccctccgttcctttttaagtgtctcttttggagaaa 31570855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 316
Target Start/End: Original strand, 17013402 - 17013440
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaa 316  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  17013402 tactacctccgttcctttttaagtgtttcttttggagaa 17013440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 37609552 - 37609515
Alignment:
Q  284 ctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  37609552 ctccgttcctttttaagtgtcacttttggagaaaattt 37609515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 28679001 - 28679041
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  28679001 tactccctccgttcctttttaagtgtcacttttggagaaaa 28679041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 35531552 - 35531512
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  35531552 tactccctccgttcctttttaagtgtcacttttggagaaaa 35531512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 45226831 - 45226795
Alignment:
Q  281 tacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||||||||||||||||||||||| ||||||||||||    
T  45226831 tacctccgttcctttttaagtgtcacttttggagaaa 45226795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 1677196 - 1677235
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  1677196 tactccctccgttcctttttaagtgtcacttttggagaaa 1677235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 318
Target Start/End: Original strand, 19093253 - 19093288
Alignment:
Q  283 cctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||||||||||||||||||||| |||||||||||||    
T  19093253 cctccgttcctttttaagtgtcacttttggagaaaa 19093288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 19929723 - 19929684
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  19929723 tactccctccgtttctttttaagtgtctcttttggagaaa 19929684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 318
Target Start/End: Original strand, 32347963 - 32347998
Alignment:
Q  283 cctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||||||||||||||||||||| |||||||||||||    
T  32347963 cctccgttcctttttaagtgtcacttttggagaaaa 32347998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 37296982 - 37296943
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  37296982 tactccctccgttcgtttttaagtgtctcttttggagaaa 37296943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 50825829 - 50825790
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  50825829 tactccctccgttcctttttaagtgtctcttttgaagaaa 50825790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 35255463 - 35255505
Alignment:
Q  275 aactactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    ||||||| | ||||||||||||||||||||||||||| |||||    
T  35255463 aactacttcttccgttcctttttaagtgtctcttttgaagaaa 35255505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 316
Target Start/End: Complemental strand, 40927000 - 40926962
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaa 316  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  40927000 tactccctctgttcctttttaagtgtctcttttggagaa 40926962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 8464712 - 8464667
Alignment:
Q  272 aacaactactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    ||||| |||| ||||||||| |||||||||||| ||||||||||||    
T  8464712 aacaaatactccctccgttcgtttttaagtgtcacttttggagaaa 8464667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 321
Target Start/End: Original strand, 7782942 - 7782974
Alignment:
Q  289 ttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||||||||||||||| ||||||||||||||||    
T  7782942 ttcctttttaagtgtcacttttggagaaaattt 7782974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 32994730 - 32994698
Alignment:
Q  278 tactacctccgttcctttttaagtgtctctttt 310  Q
    |||| ||||||||||||||||||||||||||||    
T  32994730 tactccctccgttcctttttaagtgtctctttt 32994698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 44182740 - 44182780
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| ||||||||||||||||||||||  ||||||||||||    
T  44182740 tactccctccgttcctttttaagtgtcaattttggagaaaa 44182780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 3310195 - 3310233
Alignment:
Q  277 ctactacctccgttcctttttaagtgtctcttttggaga 315  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  3310195 ctactccctccgttcctttttaagtgtctcttttggaga 3310233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 47408115 - 47408157
Alignment:
Q  275 aactactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    ||||||| |||||||||||||||||||||| ||||||||||||    
T  47408115 aactactccctccgttcctttttaagtgtcacttttggagaaa 47408157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 12838341 - 12838301
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  12838341 tactccctccgttcctttttaagtgtcacttttggagaaaa 12838301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 17896786 - 17896746
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  17896786 tactccctccgttcctttttaagtgtcacttttggagaaaa 17896746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 35112409 - 35112449
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  35112409 tactccctccgttcctttttaagtgtcacttttggagaaaa 35112449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 44480405 - 44480365
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  44480405 tactccctccgttcctttttaagtgtctcttttgaagaaaa 44480365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 7477461 - 7477418
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||| |||| |||||||||||||||||||||||| |||||||||    
T  7477461 tactccctcagttcctttttaagtgtctcttttgaagaaaattt 7477418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 18470287 - 18470326
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  18470287 tactccctccgttcctttttaagtgtcacttttggagaaa 18470326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 32966312 - 32966273
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  32966312 tactccctccgttcctttttaagtgtcacttttggagaaa 32966273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 325
Target Start/End: Complemental strand, 33922037 - 33921990
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaatttgtgt 325  Q
    |||| |||| |||| ||||||||||||||||||| |||||||||||||    
T  33922037 tactccctcagttcatttttaagtgtctcttttgaagaaaatttgtgt 33921990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 41675449 - 41675406
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||| |||||||||||||||||||||| |||||| |||||||||    
T  41675449 tactccctccgttcctttttaagtgtcacttttgcagaaaattt 41675406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 33100099 - 33100057
Alignment:
Q  275 aactactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    ||||||| ||||||||| |||||||||||| ||||||||||||    
T  33100099 aactactccctccgttcttttttaagtgtcacttttggagaaa 33100057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 316
Target Start/End: Original strand, 45324013 - 45324046
Alignment:
Q  283 cctccgttcctttttaagtgtctcttttggagaa 316  Q
    |||||||||||||| |||||||||||||||||||    
T  45324013 cctccgttccttttcaagtgtctcttttggagaa 45324046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 8264934 - 8264970
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  8264934 tccgttcctttttaagtgtcacttttagagaaaattt 8264970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 184388 - 184349
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  184388 tactccctccgttcctttttaagtgtcacttttggagaaa 184349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 195999 - 195956
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaattt 321  Q
    |||| ||||||||||||||||||||||  |||||||||||||||    
T  195999 tactccctccgttcctttttaagtgtcatttttggagaaaattt 195956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 138992 - 138950
Alignment:
Q  278 tactacctccgttcctttttaagtgtctcttttggagaaaatt 320  Q
    |||| |||||||||||||||||||||| ||||| |||||||||    
T  138992 tactccctccgttcctttttaagtgtcacttttagagaaaatt 138950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 317
Target Start/End: Complemental strand, 419890 - 419856
Alignment:
Q  283 cctccgttcctttttaagtgtctcttttggagaaa 317  Q
    |||||||||||||||||||||| ||||||||||||    
T  419890 cctccgttcctttttaagtgtcacttttggagaaa 419856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 318
Target Start/End: Complemental strand, 26381 - 26348
Alignment:
Q  285 tccgttcctttttaagtgtctcttttggagaaaa 318  Q
    |||||||||||||||||||| |||||||||||||    
T  26381 tccgttcctttttaagtgtcacttttggagaaaa 26348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1213 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1213
Description:

Target: scaffold1213; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 232 - 200
Alignment:
Q  278 tactacctccgttcctttttaagtgtctctttt 310  Q
    |||| ||||||||||||||||||||||||||||    
T  232 tactccctccgttcctttttaagtgtctctttt 200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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