View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_44 (Length: 320)
Name: NF16943_low_44
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_44 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 13879077 - 13879396
Alignment:
| Q |
1 |
agattaagttgcatcaactagctatataattataatagcaaatgaaattgttaatcatatatttataatattgattgatagcaattggtaattaatgtca |
100 |
Q |
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| T |
13879077 |
agattaagttgcatcaactagctatataattataatagcaaatgaaattgttaatcatatatttataatattgattgatagcaattggtaattaatgtca |
13879176 |
T |
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| Q |
101 |
aatccagaaattggtacaaacagaacagaacactaattaactaactaaatagctttttagatctcaaatacatgcaaactaattcatcatttaaaatagt |
200 |
Q |
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| T |
13879177 |
aatccagaaattggtacaaacagaacagaacactaattaactaactaaatagctttttagatctcaaatacatgcaaactaattcatcatttaaaatagt |
13879276 |
T |
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| Q |
201 |
aactaaaaaactacttctctgttcatccctccctcttttaagtgaaacctaaaacatatctagatgagatcatcattcaacatcaacatgatgaacaatg |
300 |
Q |
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| T |
13879277 |
aactaaaatactacttctctgttcatccctccctcttttaagtgaaacctaaaacatagctagatgagatcatcattcaacatcaacatgatgaacaatg |
13879376 |
T |
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| Q |
301 |
acatcatcatcttcatcttc |
320 |
Q |
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| T |
13879377 |
acatcatcatcttcatcttc |
13879396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 222 - 320
Target Start/End: Original strand, 13875082 - 13875185
Alignment:
| Q |
222 |
ttcatccctccctcttttaagtgaaa-cctaaaacatat----ctagatgagatcatcattcaacatcaacatgatgaacaatgacatcatcatcttcat |
316 |
Q |
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| T |
13875082 |
ttcatccctcactctcttaagtgaaaacctaaaacatatatagctagatgagatcatcattcaacatcaacatgatgaacaatgacatcatcatcttcat |
13875181 |
T |
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| Q |
317 |
cttc |
320 |
Q |
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|||| |
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| T |
13875182 |
cttc |
13875185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 13884996 - 13885034
Alignment:
| Q |
52 |
taatcatatatttataatattgattgatagcaattggta |
90 |
Q |
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| T |
13884996 |
taatcatatatttataatattgattgataccaattggta |
13885034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 13885075 - 13885159
Alignment:
| Q |
132 |
actaattaactaactaaatagctttttagatctcaaatacat---gcaaactaattcatcatttaaaatagtaactaaaaaacta |
213 |
Q |
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| T |
13885075 |
actaattaaccaactaaatccctttttagatctctaatacattcatcatactaattaagcatttaaaatagcaactaaaatacta |
13885159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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