View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16943_low_45 (Length: 319)
Name: NF16943_low_45
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_45 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 8031486 - 8031795
Alignment:
| Q |
1 |
cgtgtccatcaacattggcaaccctcccaaaccttacgagcttgacatcgacaccggcagtgatttaacttgggttcaatgcgatggacccgatgcaccg |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8031486 |
cgtgtccatcaacattggcaatcctcccaaaccttacgagcttgacatcgacaccggcagtgatttaacttgggttcaatgcgatggacccgatgcaccg |
8031585 |
T |
|
| Q |
101 |
tgtaaaggttgcaccatggtatgttttaaattataatatgttgacatttttagttattagttagtactgtttatgaaacacggacacatatacatatatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8031586 |
tgtaaaggttgcaccatggtatgttttaaattataatatgttgacatttttagttattagttagtactgtttatgaaacacggacacatatacatatatt |
8031685 |
T |
|
| Q |
201 |
ggccacaagacggacac-gtagaaagtattaataatttgaaataatagaagttattgaatgcaactatatttattagtgaaacaccgaaaaatcttcaaa |
299 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8031686 |
ggccacaagacggacactgtagaaagtaataataatttgaaataatagaagttattgaatgcaactatatttattagcgaaacaccgaaaaatcttcaaa |
8031785 |
T |
|
| Q |
300 |
gttcatctca |
309 |
Q |
| |
|
|||||||||| |
|
|
| T |
8031786 |
gttcatctca |
8031795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 8021499 - 8021662
Alignment:
| Q |
1 |
cgtgtccatcaacattggcaaccctcccaaaccttacgagcttgacatcgacaccggcagtgatttaacttgggttcaatgcgatggacccgatgcaccg |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8021499 |
cgtgtccatcaacattggcaatcctcccaatccttacgagcttgacattgacaccggcagtgatttaacttgggttcaatgtgatggacccgatgcaccg |
8021598 |
T |
|
| Q |
101 |
tgtaaaggttgcaccatggtatgttttaaattataatatgttgacatttttagttattagttag |
164 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
8021599 |
tgtaaaggttgcactttggtatgttttaaattacaatatattgacatttttagttactagttag |
8021662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 8021701 - 8021741
Alignment:
| Q |
229 |
taataatttgaaataatagaagttattgaatgcaactatat |
269 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
8021701 |
taatagtttgaaataatagaagttattgaatgtaattatat |
8021741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University