View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_48 (Length: 302)
Name: NF16943_low_48
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_48 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 302
Target Start/End: Complemental strand, 29060311 - 29060024
Alignment:
| Q |
15 |
atgaacacataattaattgcaagtattgcaattgttaacttctcaaagttatcctattcaaccatttgaatcacctcaattttaatgttaaaagaaacac |
114 |
Q |
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| T |
29060311 |
atgaacacataattaattgcaagtattgcaattgttaacgtctcaaagttatcctattcaaccatttgaatcacctcaattttaatgttaaaagaaatac |
29060212 |
T |
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| Q |
115 |
tctattttttaaactatgtagatgctgctttccaagcatgaaattcatgtattattgtaatgttgaatctttatcctttccttgctaaacaatcattttc |
214 |
Q |
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| T |
29060211 |
tctattttttaaactatgtatatgttgctttccaagcatgaaattcatgtattattgtaatgttgaatctttatcctttccttgctaaacaatcattttc |
29060112 |
T |
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| Q |
215 |
ttaataatttattcattctttgnnnnnnngtgtattcaagagttaaataactgttggttcctctaacaatatgcataagtgtgattaa |
302 |
Q |
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| T |
29060111 |
ttaataatttattcattctttgtttttttgtgtattcaagagttaaataactgttggttcctctaacaatatgcataagtgtgattaa |
29060024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 29061972 - 29061801
Alignment:
| Q |
68 |
ctattcaaccatttgaatcacctcaattttaatgttaaaagaaacactctattttttaaacta----tgtagatgctgctttccaagcatgaaattcatg |
163 |
Q |
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| T |
29061972 |
ctattcaaccatttgaattacctcaaagttaatgttaagagaaata-tctattttttaaactaatcctatgtatgttgctttccaagcatgaaattcatg |
29061874 |
T |
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| Q |
164 |
tattattgtaatgttgaatctttatcctttccttgctaaacaatcattttcttaataatttattcattctttg |
236 |
Q |
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| T |
29061873 |
tattattgaaatgtttaatctttatctttccgttactaaacagtcatttccttaatgatttattcattctttg |
29061801 |
T |
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