View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_49 (Length: 300)
Name: NF16943_low_49
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 35 - 283
Target Start/End: Original strand, 1749686 - 1749936
Alignment:
| Q |
35 |
cttttctttctatgatattcaaatagtgacaattcaggctaaaacgattgttctataaaagaagatcaataaaggactcacaacaagggaaagnnnnnnn |
134 |
Q |
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| T |
1749686 |
cttttctttctatgatattcaaatagtgacaattcaagctaaaacgattgttctataaaagaagattaataaaggactcacaacaagggaaagaaaaaaa |
1749785 |
T |
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| Q |
135 |
-tcaagcatgataaacttgatgaattaccaaatccgcacaacgaataattattgagataa-taaaattccaatctatacatcaaaataatcaaatatgct |
232 |
Q |
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| T |
1749786 |
atcaagcatgataaacttgatgaattaccaaatccgcacaacgaataattattgagataaataaaattccaatctataaatcaaaataatcaaatatgct |
1749885 |
T |
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| Q |
233 |
tctaatagtgcaagttatgaaaaagagaaaagtacaagttatgtataaaac |
283 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
1749886 |
tctaatagtgcaagttatgaaaaagataaaagtgcaagttatgtataaaac |
1749936 |
T |
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