View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16943_low_5 (Length: 711)

Name: NF16943_low_5
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16943_low_5
NF16943_low_5
[»] scaffold0006 (7 HSPs)
scaffold0006 (30-693)||(80094-80753)
scaffold0006 (150-687)||(128877-129423)
scaffold0006 (150-538)||(215328-215719)
scaffold0006 (592-687)||(215231-215326)
scaffold0006 (34-115)||(129480-129562)
scaffold0006 (147-230)||(193396-193478)
scaffold0006 (34-115)||(215779-215861)
[»] chr1 (15 HSPs)
chr1 (125-523)||(13483827-13484238)
chr1 (150-442)||(13600460-13600766)
chr1 (187-478)||(19154776-19155063)
chr1 (31-363)||(16756632-16756951)
chr1 (519-687)||(13480205-13480373)
chr1 (551-695)||(14316630-14316774)
chr1 (551-693)||(13701263-13701405)
chr1 (34-115)||(13600823-13600905)
chr1 (549-693)||(13628205-13628349)
chr1 (147-230)||(13627637-13627719)
chr1 (31-77)||(13484298-13484344)
chr1 (158-227)||(20575687-20575755)
chr1 (147-230)||(13562776-13562858)
chr1 (293-335)||(13530524-13530566)
chr1 (54-115)||(20575822-20575884)
[»] chr6 (2 HSPs)
chr6 (503-687)||(22267322-22267517)
chr6 (147-230)||(21768999-21769081)


Alignment Details
Target: scaffold0006 (Bit Score: 571; Significance: 0; HSPs: 7)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 30 - 693
Target Start/End: Complemental strand, 80753 - 80094
Alignment:
Q  30 gcataatcatccatatagtatgcaaagtttcaaacatatattgtcactaatacatataacactttatttttcagagcacctgtgaacnnnnnnnnctcaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||        |||||    
T  80753 gcataatcatccatatagtatgcaaagtttcaaacatatattgtcactaatccatataacactttatttttcagagcacctgtgaacaaaaaaaactcaa 80654  T
Q  130 tatcatacaatttcactataatataaactagatgcatattgatcataagagtgaaaccaaggttcaattcagtcaaatgacaaattaacaaataaaacaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80653 tatcatacaatttcactataatataaactagatgcatattgatcataagagtgaaaccaaggttcaattcagtcaaatgacaaattaacaaataaaacaa 80554  T
Q  230 aggaacaaaacccggactcacagtcattactaacaaactaatattgaatcatgattaaaactcaaaaaatacaccctatgaatttgaacaaagcaaagat 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80553 aggaacaaaacccggactcacagtcattactaacaaactaatattgaatcatgattaaaactcaaaaaatacaccctatgaatttgaacaaagcaaagat 80454  T
Q  330 gttaaaagtagattcgaacttaaaaataatgaaacctctagaaatagtaaaactgaaacatacctccaaaatacaaagccatatgataaacgcgagttga 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  80453 gttaaaagtagattcgaacttaaaaataatgaaacctctagaaatagtaaaactgaaacatacctccaaaatacaaagccatatgataaatgcgagttga 80354  T
Q  430 tgggttgggatccgaatttgcttaaaact---tagcaagaatttcacataaaccacaaaaactaacttttgaaaggcttactatcttcacttcacctctt 526  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  80353 tgggttgggatccgaatttgcttaaaacttagtagcaagaatttcacataaaccacaaaaactaccttttgaaaggcttactatcttcccttcacctctt 80254  T
Q  527 ttgggaacagaacacaaaccgtgttgcaactccaatgaggccatttgaatgcaaaactgaagagcactatcgtcgtttcccttctgcacatgaccggtga 626  Q
    |||||||||||||||||||||       |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  80253 ttgggaacagaacacaaaccg-------actccaatgaggccatttcaatgcaaagctgaagagcactatcgtcgtttcccttctgcacatgaccggtgt 80161  T
Q  627 tcaacgtctcatatatactcaaatttggagcccacggtcagcctttcgtaatccttaaatacttctc 693  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  80160 tcaacgtctcatatatactcaaatttggagcccacggtcagactttcgtaatccttaaatacttctc 80094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 150 - 687
Target Start/End: Complemental strand, 129423 - 128877
Alignment:
Q  150 atataaactagatgcatattgatcataagagtgaaaccaaggttcaattcagtcaaatgacaaattaacaaataaaacaaag--gaacaaaacccggact 247  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||| |  ||||||||||||||||    
T  129423 atataaactagatgcatattgatcataagagtgcaaccaaggttcaattcaatcaaatgacacattaacatataaaacaatgaagaacaaaacccggact 129324  T
Q  248 cacagtcattactaacaaactaatattgaatcatgattaaaactcaa-----------aaaatacaccctatgaatttgaacaaagcaaagatgttaaaa 336  Q
    |||| || ||||||| ||||||||||||| ||| |||||||||||||           ||||||||||||| |||||||||| ||||||||||||||||     
T  129323 cacaatcgttactaataaactaatattgattcaagattaaaactcaacaaaaaaaaaaaaaatacaccctacgaatttgaactaagcaaagatgttaaat 129224  T
Q  337 gtagattcgaacttaaaaataatgaaacctctagaaatagtaaaactgaaacatacctccaaaatacaaagcca-tatgataaacgcgagttgatgggtt 435  Q
     || ||| |||| ||||||||||   | |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  129223 ttacatttgaacataaaaataatcgcaactctagaaatagaaaaactgaaacatacctccaaaatacaaagccaatatgataaacgcgagctgatgggtt 129124  T
Q  436 gggatccgaatttgcttaaaacttag---caagaatttcacataaaccacaaaaactaacttttgaaaggcttactatcttcacttcacctcttttggga 532  Q
     ||||||||||||||||| || ||||   ||| |||||||||||||| ||         ||||||||||||| ||||||| ||||||||||||||||| |    
T  129123 aggatccgaatttgcttacaagttagtaacaacaatttcacataaactac---------cttttgaaaggctcactatctgcacttcacctcttttggaa 129033  T
Q  533 acagaacacaaaccgtgttgcaactccaatgaggccatttgaatgcaaaactgaagagcactatcgtcgtttcccttctgcacatgaccggtgatcaacg 632  Q
    ||||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||||| | ||||||||||||| |||||| |||||||||||    
T  129032 acagaacacaaactgtgttgcaactccaatgatgccatttcaatgcaaagctgaagagcactatcattgtttcccttctgcgcatgacaggtgatcaacg 128933  T
Q  633 tctcatatat-actcaaatttggagcccacggtcagcctttcgtaatccttaaata 687  Q
    |||||||||| ||||| |||||||||| || ||| ||||||| |||||||||||||    
T  128932 tctcatatataactcacatttggagccaacagtcggcctttcataatccttaaata 128877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 150 - 538
Target Start/End: Complemental strand, 215719 - 215328
Alignment:
Q  150 atataaactagatgcatattgatcataagagtgaaaccaaggttcaattcagtcaaatgacaaattaacaaataaaacaaag--gaacaaaacccggact 247  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| | |||||||||||  ||||||||||||||||    
T  215719 atataaactagatgcatattgatcataagagtgcaaccaaggttcaattcaatcaaatgacacattaatagataaaacaaagaagaacaaaacccggact 215620  T
Q  248 cacagtcattactaacaaactaatattgaatcatgattaaaactcaa-------aaaatacaccctatgaatttgaacaaagcaaagatgttaaaagtag 340  Q
    |||| || ||||||| ||| ||||||||| | |  ||||||||||||       ||||||||||||| |||||||||| ||||||||||||||||  ||     
T  215619 cacattcgttactaataaattaatattgatttaaaattaaaactcaacaaaataaaaatacaccctacgaatttgaactaagcaaagatgttaaatttac 215520  T
Q  341 attcgaacttaaaaataatgaaacctctagaaatagtaaaactgaaacatacctccaaaatacaaagcc-atatgataaacgcgagttgatgggttggga 439  Q
    ||| |||| ||||||||||   | |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||| |||    
T  215519 atttgaacataaaaataatcgcaactctagaaatagaaaaactgaaa-atacctccaaaatacaaagccaatatgataaacgcgagctgatgggttagga 215421  T
Q  440 tccgaatttgcttaaaacttag---caagaatttcacataaaccacaaaaactaacttttgaaaggcttactatcttcacttcacctcttttgggaacag 536  Q
    |||||||||||||| |||||||   ||| ||||||||||         |||||| |||||||||||||||||| || ||||||||||||||||| |||||    
T  215420 tccgaatttgcttacaacttagtaacaacaatttcacat---------aaactaccttttgaaaggcttactacctgcacttcacctcttttggaaacag 215330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 592 - 687
Target Start/End: Complemental strand, 215326 - 215231
Alignment:
Q  592 actatcgtcgtttcccttctgcacatgaccggtgatcaacgtctcatatatactcaaatttggagcccacggtcagcctttcgtaatccttaaata 687  Q
    |||||| | |||||||| |||| |||||| |||||||||||||||||||||||||| |||||||||| || ||| ||||||| |||||||||||||    
T  215326 actatcattgtttccctactgcgcatgacgggtgatcaacgtctcatatatactcacatttggagccaacagtcggcctttcataatccttaaata 215231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 129562 - 129480
Alignment:
Q  34 aatcatccatatagtatgcaaagtttcaaacatatattgtcactaatacatataacacttt-atttttcagagcacctgtgaa 115  Q
    |||||||||||| ||||||||||||||||||||||||||| ||| || |||| ||||||||  ||||||||||||||| ||||    
T  129562 aatcatccatattgtatgcaaagtttcaaacatatattgttactgatccatacaacactttgttttttcagagcacctatgaa 129480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 230
Target Start/End: Original strand, 193396 - 193478
Alignment:
Q  147 ataatataaactagatgcatattgatcataagagtgaaaccaaggttcaattcagtcaaatgacaaattaacaaataaaacaaa 230  Q
    ||||| |||| |||||||||||||||| ||||| || || |||||||||||||| || ||||||| ||||||| ||||||||||    
T  193396 ataatctaaaatagatgcatattgatcgtaagaatggaaacaaggttcaattcaatc-aatgacacattaacagataaaacaaa 193478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 215861 - 215779
Alignment:
Q  34 aatcatccatatagtatgcaaagtttcaaacatatattgtcactaatacatataacacttt-atttttcagagcacctgtgaa 115  Q
    |||||||||||| ||||||||||||| ||||||||||||| | | || |||| | ||||||  ||||||||||||||| ||||    
T  215861 aatcatccatattgtatgcaaagtttaaaacatatattgttattgatccatacagcactttgttttttcagagcacctatgaa 215779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 1e-86; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 125 - 523
Target Start/End: Complemental strand, 13484238 - 13483827
Alignment:
Q  125 ctcaatatcatacaatttcactataatataaactagatgcatattgatcataagagtgaaaccaaggttcaattcagtcaaatgacaaattaacaaataa 224  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||    
T  13484238 ctcaatatcatataatttcactatgatataaactagatgcatattgatcataagagtgcaaccaaggttcaattcagtcaaatgacacattaacagataa 13484139  T
Q  225 aacaa---aggaacaaaacccggactcacagtcattactaacaaactaatattgaatcatgattaaaactc--aaaaaatacaccctatgaatttgaaca 319  Q
    |||||   | ||| |||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||  |||||||||| |||| ||| |||||||    
T  13484138 aacaaaataagaataaaacccggactcacaatcattactaacaaactaatcttgaatcaagattaaaactcataaaaaatacatcctacgaaattgaaca 13484039  T
Q  320 aagcaaagatgttaaaagtagattcgaac-ttaaaaataatgaaacctct---agaaatagtaaaactgaaacatacctccaaaatacaaagccatatga 415  Q
    ||||||||||||||||  || |||  |||  ||||| |||||| | || |     ||| |  |||||| ||||||||||||   ||||||||||| ||||    
T  13484038 aagcaaagatgttaaatttacattgaaacaataaaactaatgacaactttcaacaaaaaaaaaaaacttaaacatacctccgttatacaaagccagatga 13483939  T
Q  416 taaacgcgagttgatgggttgggatccgaatttgcttaaaac---ttagcaagaattt-cacataaaccacaaaaactaacttttgaaaggcttactatc 511  Q
     |||||||||||||||| ||||||||| ||||||||||  ||   ||| ||| ||||| ||| ||| |||||||||||  ||||||||||||||||||||    
T  13483938 caaacgcgagttgatggtttgggatccaaatttgcttacgacttattaacaacaatttgcacgtaatccacaaaaactgccttttgaaaggcttactatc 13483839  T
Q  512 ttcacttcacct 523  Q
    |||| |||||||    
T  13483838 ttcaattcacct 13483827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 150 - 442
Target Start/End: Complemental strand, 13600766 - 13600460
Alignment:
Q  150 atataaactagatgcatattgatcataagagtgaaaccaaggttcaattcagtcaaatgacaaattaacaaataaaacaa--aggaacaaaacccggact 247  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| |||||||||  | ||||||||||||||||    
T  13600766 atataaactagatgcatattgatcataagagtgcaaccaaggttcaattcaatcaaatgacacattaacatataaaacaatgaagaacaaaacccggact 13600667  T
Q  248 cacagtcattactaacaaactaatattgaatcatgattaaaactc-----------aaaaaatacaccctatgaatttgaacaaagcaaagatgttaaaa 336  Q
    |||| || ||||||| ||||||||||||| ||| |||||||||||           ||||||||||||||| |||||||||| ||||||||||||||||     
T  13600666 cacaatcgttactaataaactaatattgattcaagattaaaactcaacaaaaaaaaaaaaaatacaccctacgaatttgaactaagcaaagatgttaaat 13600567  T
Q  337 gtagattcgaacttaaaaataatgaaacctctagaaatagtaaaactgaaacatacctccaaaatacaaagcc-atatgataaacgcgagttgatgggtt 435  Q
     || ||| |||| ||||||||||   | |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  13600566 ttacatttgaacataaaaataatcgcaactctagaaatagaaaaactgaaacatacctccaaaatacaaagccaatatgataaacgcgagctgatgggtt 13600467  T
Q  436 gggatcc 442  Q
     ||||||    
T  13600466 aggatcc 13600460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 187 - 478
Target Start/End: Original strand, 19154776 - 19155063
Alignment:
Q  187 caaggttcaattcagtcaaatgacaaattaacaaataaaacaaaggaa---caaaacccggactcacagtcattactaacaaactaatattgaatcatga 283  Q
    |||||||||||||| |||| ||||| |||||||||||||||||| |||   |||||||  | |||||| ||||||||||||||||||||||             
T  19154776 caaggttcaattcaatcaa-tgacacattaacaaataaaacaaaagaagaacaaaacctaggctcacaatcattactaacaaactaatatt--------- 19154865  T
Q  284 ttaaaactca--aaaaatacaccctatgaatttgaacaaagcaaagatgttaaaagtagattcgaacttaaaaataatgaaacctctagaaatagtaaaa 381  Q
      ||||||||  |||||||||||| | ||| |||||||||||||||||||||||  || |||||||| |||||||||||||||||||| |||||| ||||    
T  19154866 --aaaactcataaaaaatacacccaacgaaattgaacaaagcaaagatgttaaatttacattcgaacataaaaataatgaaacctctataaatagaaaaa 19154963  T
Q  382 ctgaaacatacctccaaaatacaaagccatatgataaacgcgagttgatgggttgggatccgaatttgcttaaaacttag---caagaatttcacataaa 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||   |||||||||||| ||||    
T  19154964 ctgaaacatacctccaaaatacaaagccatatgataaacgcgagttgatgggttagaatccgaatttgcttaaaacttagtaacaagaatttcacgtaaa 19155063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 31 - 363
Target Start/End: Original strand, 16756632 - 16756951
Alignment:
Q  31 cataatcatccatatagtatgcaaagtttcaaacatatattgtcactaatacatataacactttatttttcagagcacctgtgaacnnnnnnnnctcaat 130  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||| || |||| | |||||| ||||||||||||||| ||||         || |||    
T  16756632 cataatcatccatgtagtatgcaaagtttcaaacatatattgacactgatccatacatcactttgtttttcagagcacctatgaa----aaaaacttaat 16756727  T
Q  131 atcatacaatttcactataatataaactagatgcatattgatcataagagtgaaaccaaggttcaattcagtcaaatgacaaattaacaaataaaacaa- 229  Q
    |||||| ||||||  ||| |||||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||||||| |||||||||||| ||||     
T  16756728 atcatataatttcgttatgatataaactaaatgcatattgatcataagagtgcaaccatggttcaagtcagtcaaatgacacattaacaaataagacaaa 16756827  T
Q  230 --aggaacaaaacccggactcacagtcattactaacaaactaatattgaatcatgattaaaactcaaaaaatacaccctatgaatttgaacaaagcaaag 327  Q
      | |||||||||||||||||||| |||||||||||  |||||||| |||||| |||||| ||||| ||          | |||||||||||||||||||    
T  16756828 agaagaacaaaacccggactcacaatcattactaac--actaatatcgaatcaagattaagactcataa----------acgaatttgaacaaagcaaag 16756915  T
Q  328 atgttaaaagtagattcgaacttaaaaataatgaaa 363  Q
    ||||||||  || |||||||| ||||||||||||||    
T  16756916 atgttaaatttacattcgaacataaaaataatgaaa 16756951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 519 - 687
Target Start/End: Complemental strand, 13480373 - 13480205
Alignment:
Q  519 cacctcttttgggaacagaacacaaaccgtgttgcaactccaatgaggccatttgaatgcaaaactgaagagcactatcgtcgtttcccttctgcacatg 618  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||| || ||||||||||||||||| ||||||||||||| ||||    
T  13480373 cacctcttttgggaacagaacactaactgtgttgcaactccaatgatgccatttcaatgcgaagctgaagagcactatcgttgtttcccttctgcgcatg 13480274  T
Q  619 accggtgatcaacgtctcatatatactcaaatttggagcccacggtcagcctttcgtaatccttaaata 687  Q
    ||||||||||||||||||||||||||||| |||||||||| || ||| ||||||| |||||||||||||    
T  13480273 accggtgatcaacgtctcatatatactcacatttggagccaacagtcggcctttcataatccttaaata 13480205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 551 - 695
Target Start/End: Complemental strand, 14316774 - 14316630
Alignment:
Q  551 tgcaactccaatgaggccatttgaatgcaaaactgaagagcactatcgtcgtttcccttctgcacatgaccggtgatcaacgtctcatatatactcaaat 650  Q
    ||||||| |||||||||||||| | ||| || |||||||||||| |||||||||||||||||||  ||| | | ||||||| ||||||||||||||| ||    
T  14316774 tgcaacttcaatgaggccatttcattgcgaagctgaagagcactttcgtcgtttcccttctgcatgtgatcagcgatcaacttctcatatatactcacat 14316675  T
Q  651 ttggagcccacggtcagcctttcgtaatccttaaatacttctctg 695  Q
    ||||||||  || ||  |||||| |||||||||||||||||||||    
T  14316674 ttggagccagcgatcgacctttcataatccttaaatacttctctg 14316630  T

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Target: chr1; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 551 - 693
Target Start/End: Original strand, 13701263 - 13701405
Alignment:
Q  551 tgcaactccaatgaggccatttgaatgcaaaactgaagagcactatcgtcgtttcccttctgcacatgaccggtgatcaacgtctcatatatactcaaat 650  Q
    |||||||||||||||||||||| | ||| || ||||||||| || ||| ||||||||||| |||  ||||| |  |||||||||||||||||||||||||    
T  13701263 tgcaactccaatgaggccatttcattgcgaagctgaagagccctttcgacgtttcccttcagcatgtgaccagcaatcaacgtctcatatatactcaaat 13701362  T
Q  651 ttggagcccacggtcagcctttcgtaatccttaaatacttctc 693  Q
    ||||||||  |  ||  |||||| ||||||| |||||||||||    
T  13701363 ttggagccagcaatcgacctttcataatcctcaaatacttctc 13701405  T

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Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 13600905 - 13600823
Alignment:
Q  34 aatcatccatatagtatgcaaagtttcaaacatatattgtcactaatacatataacacttt-atttttcagagcacctgtgaa 115  Q
    |||||||||||| ||||||||||||||||||||||||||| ||| || |||| ||||||||  ||||||||||||||| ||||    
T  13600905 aatcatccatattgtatgcaaagtttcaaacatatattgttactgatccatacaacactttgttttttcagagcacctatgaa 13600823  T

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Target: chr1; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 549 - 693
Target Start/End: Original strand, 13628205 - 13628349
Alignment:
Q  549 gttgcaactccaatgaggccatttgaatgcaaaactgaagagcactatcgtcgtttcccttctgcacatgaccggtgatcaacgtctcatatatactcaa 648  Q
    |||||||||||||||||||||||| | ||| ||  |||| ||| ||| |   ||||||||||||||| ||||  ||||||||||||||||||||||  |     
T  13628205 gttgcaactccaatgaggccatttcattgcgaagttgaaaagccctaacactgtttcccttctgcacgtgacaagtgatcaacgtctcatatataccgac 13628304  T
Q  649 atttggagcccacggtcagcctttcgtaatccttaaatacttctc 693  Q
    ||||||||||  || ||  |||||| ||||||| ||| |||||||    
T  13628305 atttggagccagcgatcgacctttcataatcctcaaacacttctc 13628349  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 230
Target Start/End: Original strand, 13627637 - 13627719
Alignment:
Q  147 ataatataaactagatgcatattgatcataagagtgaaaccaaggttcaattcagtcaaatgacaaattaacaaataaaacaaa 230  Q
    ||||| |||| |||||||||||||||| ||||| || || |||||||||||||| || ||||||| ||||||| ||||||||||    
T  13627637 ataatctaaagtagatgcatattgatcgtaagaatgcaaacaaggttcaattcaatc-aatgacacattaacagataaaacaaa 13627719  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 13484344 - 13484298
Alignment:
Q  31 cataatcatccatatagtatgcaaagtttcaaacatatattgtcact 77  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  13484344 cataattatccacatagtatgcaaagtttcaaacatatattgtcact 13484298  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 20575755 - 20575687
Alignment:
Q  158 tagatgcatattgatcataagagtgaaaccaaggttcaattcagtcaaatgacaaattaacaaataaaac 227  Q
    |||||||||||||||| ||||| || || |||||||||||||| || ||||||| ||||||| |||||||    
T  20575755 tagatgcatattgatcgtaagattgcaaacaaggttcaattcaatc-aatgacacattaacagataaaac 20575687  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 230
Target Start/End: Original strand, 13562776 - 13562858
Alignment:
Q  147 ataatataaactagatgcatattgatcataagagtgaaaccaaggttcaattcagtcaaatgacaaattaacaaataaaacaaa 230  Q
    ||||| |||| |||||||| ||||||| ||||| || || |||||||||||||| ||  |||||| ||||||| ||||||||||    
T  13562776 ataatctaaaatagatgcacattgatcgtaagaatgcaaacaaggttcaattcaatc-gatgacacattaacagataaaacaaa 13562858  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 13530524 - 13530566
Alignment:
Q  293 aaaaaatacaccctatgaatttgaacaaagcaaagatgttaaa 335  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||    
T  13530524 aaaaagtacaccccatgaaattgaacaaagcaaagatgttaaa 13530566  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 20575884 - 20575822
Alignment:
Q  54 aagtttcaaacatatattgtcactaatacatataacacttt-atttttcagagcacctgtgaa 115  Q
    ||||||||||||||||||||| || || |||| ||||||||  ||||||||||||| ||||||    
T  20575884 aagtttcaaacatatattgtctctgatgcatacaacactttgttttttcagagcacatgtgaa 20575822  T

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Target: chr6 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 503 - 687
Target Start/End: Original strand, 22267322 - 22267517
Alignment:
Q  503 cttactatcttcacttcacctcttttgggaacagaacacaaaccgtgttgcaactccaatgaggccatttgaatgcaaaactgaagag-----------c 591  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||  |||||||           |    
T  22267322 cttaccatcttcacttcacctcttttgggaatagaacacaaactgtgttgcaactccaatgatgccatttcaatgcaaagttgaagagtacaatcagagc 22267421  T
Q  592 actatcgtcgtttcccttctgcacatgaccggtgatcaacgtctcatatatactcaaatttggagcccacggtcagcctttcgtaatccttaaata 687  Q
    |||||| | ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || || ||| ||||||| |||||||||||||    
T  22267422 actatcattgtttcccttctgcgcatgaccggtgatcaacgtctcatatatactcacatttggatccaacagtcggcctttcataatccttaaata 22267517  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 230
Target Start/End: Original strand, 21768999 - 21769081
Alignment:
Q  147 ataatataaactagatgcatattgatcataagagtgaaaccaaggttcaattcagtcaaatgacaaattaacaaataaaacaaa 230  Q
    ||||| |||| |||||||||||||||| | ||| || || |||||||||||| | | |||||||| ||||||| ||||||||||    
T  21768999 ataatctaaaatagatgcatattgatcgttagaatgcaaacaaggttcaatttaat-aaatgacacattaacagataaaacaaa 21769081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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