View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_50 (Length: 300)
Name: NF16943_low_50
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 52 - 288
Target Start/End: Original strand, 40610307 - 40610543
Alignment:
| Q |
52 |
attcatcatctatattgcacgaaaggaacaccaaaatacatagagaaacaacactagcaagcttaatttaaccttgtgcaaattaagcttgttcttatta |
151 |
Q |
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| T |
40610307 |
attcatcatctatattgcacgaaaggaacaccaaaatacatagagaaacaacactagcaagcttaatttaaccttatgcaaattaagcttgttcttatta |
40610406 |
T |
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| Q |
152 |
ccaattacatgttgcatatactttagtacacgttcattcattttcattcaacctatagaccatgtaactggtaccacaccatcatcagtatttaacccta |
251 |
Q |
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| T |
40610407 |
ccaattacatgttgcatatactttagtacacgttcattcattttcattcaagctatagaccatgtaactggtaccacaccatcatcagtatttaacccta |
40610506 |
T |
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| Q |
252 |
atgcattccacacagctacagatccatccacaatatt |
288 |
Q |
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| T |
40610507 |
atgcattccacacagctacagatccatccacaatatt |
40610543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 40627667 - 40627749
Alignment:
| Q |
206 |
atagaccatgtaactggtaccacaccatcatcagtatttaaccctaatgcattccacacagctacagatccatccacaatatt |
288 |
Q |
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| T |
40627667 |
atagaccatgtaactggtactacaccatcatctgtattcaaccctaatgcattccacacagatacagatccatccacaatatt |
40627749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 40616956 - 40617038
Alignment:
| Q |
206 |
atagaccatgtaactggtaccacaccatcatcagtatttaaccctaatgcattccacacagctacagatccatccacaatatt |
288 |
Q |
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| T |
40616956 |
atagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaatatt |
40617038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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