View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_53 (Length: 296)
Name: NF16943_low_53
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 280
Target Start/End: Complemental strand, 38279301 - 38279036
Alignment:
| Q |
15 |
atgcataaccgtgacaccgagtccaatacaaagtaccactacccccaatgccaatgccaccttcatcctaatcctcatcctccctttcttcacatcaact |
114 |
Q |
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| T |
38279301 |
atgcataaccgtgacaccgagtccaatacaaagtaccactacccccaatgccaatgccaccttcatcctaatcctcatcctccctttcttcacatcaact |
38279202 |
T |
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| Q |
115 |
atatatgacctcccatccttcgcccctcttcccttcactgtcctcaacaaatgattctcttgcaaatcaagaacataactaaccattccacttagcagta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38279201 |
atatatgacctcccatccttcgcccctcttcccttcactgtcctcaacaaatgattctcttgcaaatcaagaacataactaaccattccacttagcagta |
38279102 |
T |
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| Q |
215 |
tatcaataaaaccaaaaccaatcaacacaaacaatatagagaaaatcttggttgcagtactattag |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38279101 |
tatcaataaaaccaaaaccaatcaacacaaacaatatagagaaaatcttggttgcagtactattag |
38279036 |
T |
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