View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16943_low_54 (Length: 288)
Name: NF16943_low_54
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_54 |
 | |
|
| [»] chr7 (11 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 14605080 - 14604793
Alignment:
| Q |
1 |
ggtcagatcaatttgaacaacatttctcatcattccaatttcacgaggaatcgaaccagaaagattgttgtcattcaaccgtaaatcttttaggttcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14605080 |
ggtcagatcaatttgaacaacatttctcatcattccaatttcacgaggaatcgaaccagaaagattgttgtcattcaaccgtaaatcttttaggttcacc |
14604981 |
T |
|
| Q |
101 |
aaccccccaatttccacaggaatgctaccagataagttattgtcagaaagatatagatactctagcttccttaactttccaattcccatagggatgtggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14604980 |
aaccccccaatttccacaggaatgcttccagataagttattgtcagaaagatatagatactctagcttccttaactttccaattcccagagggatgtggc |
14604881 |
T |
|
| Q |
201 |
cactaagatggttttcagaaaatgtaagagattgtaaatcactcaagttttcaattgttcgagggatttcacctgagagagagttatt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14604880 |
cactaagatggttttcagaaaatgtaagagattgtaaatcactcaagttttcaattgttcgagggatttcacctgagagagagttatt |
14604793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 14604783 - 14604505
Alignment:
| Q |
10 |
aatttgaacaacatttctcatcattccaatttcacgaggaatcgaaccagaaagattgttgtcattcaaccgtaaatcttttaggttcaccaacccccca |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14604783 |
aattagaacaacatttctcatcattccaatttcacgaggaatcgaaccagaaagattgttgtcattcaaccgtaaatcttttaggttcaccaacccccca |
14604684 |
T |
|
| Q |
110 |
atttccacaggaatgctaccagataagttattgtcagaaagatatagatactctagcttccttaactttccaattcccatagggatgtggccactaagat |
209 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14604683 |
atgtccacaggaatgcttccagataagttattgtcagaaagatatagatactctagcttccttaactttccaattcccagagggatgtggccactaagat |
14604584 |
T |
|
| Q |
210 |
ggttttcagaaaatgtaagagattgtaaatcactcaagttttcaattgttcgagggatttcacctgagagagagttatt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14604583 |
ggttttcagaaaatgtaagagattgtaaatcactcaggttttcaattgttcgagggatttcacctgagagagagttatt |
14604505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 16024248 - 16024069
Alignment:
| Q |
16 |
aacaacatttctcatcattccaatttcacgaggaatcgaaccagaaagattgttgtcattcaaccgtaaatcttttaggttcaccaaccccccaatttcc |
115 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
16024248 |
aacaacctttctcagcattccaatttcacgaggaagcgaaccagaaagattgttgtcattcaaccataactcttttaggttcaccaaccccccaatttcc |
16024149 |
T |
|
| Q |
116 |
acaggaatgctaccagataagttattgtcagaaagatatagatactctagcttccttaactttccaattcccatagggat |
195 |
Q |
| |
|
||||||| || ||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
16024148 |
acaggaacgcgaccagataagttattgtcaaaaagatgtagatactctagctttcttaactttccaattcccgtagggat |
16024069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 16171732 - 16171541
Alignment:
| Q |
11 |
atttgaacaacatttctcatcattccaatttcacgaggaatcgaaccagaaagattgttgtcattcaaccgtaaatcttttaggttcaccaaccccccaa |
110 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||| | |||||||| |||||| |
|
|
| T |
16171732 |
atttgaacaacatttctcaacattccaatttcacgaggaatcgaaccagaaagattattgtcattaaaccttaactctttcattttcaccaattccccaa |
16171633 |
T |
|
| Q |
111 |
tttccacaggaatgctaccagataagttattgtcagaaagatatagatactctagcttccttaactttccaattcccatagggatgtggcca |
202 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
16171632 |
tttccacaggaatactaccagataagttattgtcaaaaatatatagatattctagcttccttaactttccaatttccataggaaggtggcca |
16171541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 16102054 - 16101863
Alignment:
| Q |
11 |
atttgaacaacatttctcatcattccaatttcacgaggaatcgaaccagaaagattgttgtcattcaaccgtaaatcttttaggttcaccaaccccccaa |
110 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| ||| ||| ||||| | ||||||||| |||||| |
|
|
| T |
16102054 |
atttgaacaacatttctcaacattccaatttcacgaggaatcgaaccagaaagattattgttattaaactttaactctttcattttcaccaactccccaa |
16101955 |
T |
|
| Q |
111 |
tttccacaggaatgctaccagataagttattgtcagaaagatatagatactctagcttccttaactttccaattcccatagggatgtggcca |
202 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
16101954 |
tttccacaggaatactaccagataagttattgtcaaaaatatatagatattctagcttccttaactttccaatttccataggaaggtggcca |
16101863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 16024070 - 16023925
Alignment:
| Q |
50 |
atcgaaccagaaagattgttgtcattcaaccgtaaatcttttaggttcaccaaccccccaatttccacaggaatgctaccagataagttattgtcagaaa |
149 |
Q |
| |
|
||||||||||||||||| |||||||| |||| ||||||||| | |||| |||| ||||||||||||||||||| || ||||||||||||||||||| ||| |
|
|
| T |
16024070 |
atcgaaccagaaagattattgtcattaaaccttaaatctttcatgttcgccaatcccccaatttccacaggaacgcgaccagataagttattgtcaaaaa |
16023971 |
T |
|
| Q |
150 |
gatatagatactctagcttccttaactttccaattcccatagggat |
195 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
16023970 |
gatgtagatactctagctttcttaactttccaattcccgtagggat |
16023925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 202
Target Start/End: Complemental strand, 14604495 - 14604303
Alignment:
| Q |
10 |
aatttgaacaacatttctcatcattccaatttcacgaggaatcgaaccagaaagattgttgtcattcaaccgtaaatcttttaggttcaccaacccccca |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| ||||||||| | |||| |||| |||||| |
|
|
| T |
14604495 |
aattagaacaacatttctcatcattccaatttcacgaggaatcgaaccacaaagattattgtcattaaaccttaaatctttcatgttcgccaatccccca |
14604396 |
T |
|
| Q |
110 |
atttccacaggaatgctaccagataagttattgtcagaaagatatagatactctagcttccttaactttccaattcccatagggatgtggcca |
202 |
Q |
| |
|
||||| | ||||| ||||||||||||||||| | | | || |||| ||| |||||||| ||||||||||||| || |||||||||||||| |
|
|
| T |
14604395 |
atttcagctggaatactaccagataagttattttgaaacaggtataaatattctagcttttgtaactttccaatttccttagggatgtggcca |
14604303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 50 - 202
Target Start/End: Complemental strand, 16023926 - 16023774
Alignment:
| Q |
50 |
atcgaaccagaaagattgttgtcattcaaccgtaaatcttttaggttcaccaaccccccaatttccacaggaatgctaccagataagttattgtcagaaa |
149 |
Q |
| |
|
||||||||||||||||| |||||||| |||| ||| ||||| | |||| |||| ||||||||||| | ||||| ||||||||||||||||| | | | | |
|
|
| T |
16023926 |
atcgaaccagaaagattattgtcattaaaccttaactctttcatgttcgccaatcccccaatttcagctggaatactaccagataagttattttgaaaca |
16023827 |
T |
|
| Q |
150 |
gatatagatactctagcttccttaactttccaattcccatagggatgtggcca |
202 |
Q |
| |
|
| |||| ||| |||||||| ||||||||||||| || |||||||||||||| |
|
|
| T |
16023826 |
ggtataaatattctagcttttgtaactttccaatttccttagggatgtggcca |
16023774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 14605127 - 14605081
Alignment:
| Q |
242 |
ctcaagttttcaattgttcgagggatttcacctgagagagagttatt |
288 |
Q |
| |
|
||||||||| |||||||| | |||||||||||||||||||||||||| |
|
|
| T |
14605127 |
ctcaagtttccaattgttggtgggatttcacctgagagagagttatt |
14605081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 16102121 - 16102065
Alignment:
| Q |
232 |
ttgtaaatcactcaagttttcaattgttcgagggatttcacctgagagagagttatt |
288 |
Q |
| |
|
||||| || ||| |||||| ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
16102121 |
ttgtatattacttaagtttccaattgtcggcgggatttcacctgagagagagttatt |
16102065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 16171799 - 16171743
Alignment:
| Q |
232 |
ttgtaaatcactcaagttttcaattgttcgagggatttcacctgagagagagttatt |
288 |
Q |
| |
|
||||| || ||| |||||| ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
16171799 |
ttgtatattacttaagtttccaattgtcggcgggatttcacctgagagagagttatt |
16171743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University