View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16943_low_63 (Length: 262)

Name: NF16943_low_63
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16943_low_63
NF16943_low_63
[»] chr2 (10 HSPs)
chr2 (13-261)||(10493769-10494017)
chr2 (13-261)||(7477559-7477810)
chr2 (13-246)||(10489694-10489934)
chr2 (13-99)||(7481310-7481396)
chr2 (15-113)||(10475466-10475564)
chr2 (17-148)||(10545956-10546088)
chr2 (158-245)||(10519315-10519402)
chr2 (67-128)||(10508382-10508443)
chr2 (156-227)||(10508547-10508619)
chr2 (181-237)||(10447562-10447618)
[»] chr5 (1 HSPs)
chr5 (49-100)||(33578497-33578548)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 10493769 - 10494017
Alignment:
Q  13 aatatgaatttgaattataagtaaaactgatagattattataaaaatgcccaaggtcaataaaaattaaatattatacgtttctaaatctgaactgaagt 112  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10493769 aatatgaatttgaattataagtaaaactgataaattattataaaaatgcccaaggtcaataaaaattaaatattatacgtttctaaatctgaactgaagt 10493868  T
Q  113 tagatggtctgtgtattgaatatagagaaacacacacaagattatgttattgaagttctctttaaaaataaacaaaattgttcaactagcaatgaaacta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10493869 tagatggtctgtgtattgaatatagagaaacacacacaagattatgttattgaagttctctttaaaaataaacaaaattgttcaactagcaatgaaacta 10493968  T
Q  213 caaaacacatgttatcaatagcagtgtgaagcatagggaatgtgacgta 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10493969 caaaacacatgttatcaatagcagtgtgaagcatagggaatgtgacgta 10494017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 7477810 - 7477559
Alignment:
Q  13 aatatgaatttgaattataagtaaaactgatagattattataaaaatgcccaa--ggtcaataaaaattaaatattatacgtttctaaatctgaa-ctga 109  Q
    |||||||||||||||||||||||||||||| | || |||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||| ||||    
T  7477810 aatatgaatttgaattataagtaaaactgagaaataattataaaaatgcccaaaaggtcaataaaaattaaatattatatgtttctaaatctgaaactga 7477711  T
Q  110 agttagatggtctgtgtattgaatatagagaaacacacacaagattatgttattgaagttctcttta-aaaataaacaaaattgttcaactagcaatgaa 208  Q
    ||||||||| ||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7477710 agttagatgctctgtgtatagaatatagagaaacacgcagaagattatgttattgaagttctctttataaaataaacaaaattgttcaactagcaatgaa 7477611  T
Q  209 actacaaaacacatgttatcaatagcagtgtgaagcatagggaatgtgacgta 261  Q
    |||||||||||||||||| | ||||||||||||| ||| ||||| ||||||||    
T  7477610 actacaaaacacatgtta-ccatagcagtgtgaatcatcgggaaagtgacgta 7477559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 10489694 - 10489934
Alignment:
Q  13 aatatgaatttgaattataagtaaaactgatagattattataaaaatgcccaaggtcaataaaaattaaatattatacgtttctaaatctgaactgaagt 112  Q
    |||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  10489694 aatatgaatttgaattataagtaaaactgagaaataattataaaaatgcccaaggtcaataaaaattaaatgttacacgtttctaaatctgaactgaagt 10489793  T
Q  113 tagatggtctgtgtattgaatatagagaaacacacacaagattatgttattgaagt--------tctcttta-aaaataaacaaaattgttcaactagca 203  Q
    |||| |  || || || ||||||||| |||| |||| ||||| ||||||  |||||        ||||||||  ||||||||||||||||||||||||||    
T  10489794 tagaag--ctctgcatagaatatagacaaactcacagaagataatgttacagaagttctctaactctctttatgaaataaacaaaattgttcaactagca 10489891  T
Q  204 atgaaactacaaaacacatgttatcaatagcagtgtgaagcat 246  Q
    || |||||| |||||||||| ||||||||||| ||||||||||    
T  10489892 ataaaactagaaaacacatgatatcaatagcattgtgaagcat 10489934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 7481396 - 7481310
Alignment:
Q  13 aatatgaatttgaattataagtaaaactgatagattattataaaaatgcccaaggtcaataaaaattaaatattatacgtttctaaa 99  Q
    ||||||||| |||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7481396 aatatgaatctgaattataagtaaaactgagaaataattataaaaatgcccaaggtcaataaaaattaaatgttatacgtttctaaa 7481310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 10475466 - 10475564
Alignment:
Q  15 tatgaatttgaattataagtaaaactgatagattattataaaaatgcccaaggtcaataaaaattaaatattatacgtttctaaatctgaactgaagtt 113  Q
    |||||||||||||||||||||||||||| | || ||||||||||||||||||||| |||| |||||||||||||| |||| |||||||||| |||||||    
T  10475466 tatgaatttgaattataagtaaaactgagaaataattataaaaatgcccaaggtcgataataattaaatattataagtttataaatctgaattgaagtt 10475564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 10545956 - 10546088
Alignment:
Q  17 tgaatttgaattataagtaaaactgatagattattataaaaatgcccaaggtcaataaaaattaaatattatacgtttctaaatctgaactgaagttaga 116  Q
    |||||||||||||||||||||||||| | || |||||||||||  ||||||||||||| ||||||||||||  ||||||||||||| || ||||||||||    
T  10545956 tgaatttgaattataagtaaaactgagacataattataaaaatctccaaggtcaataataattaaatattaaccgtttctaaatctaaattgaagttaga 10546055  T
Q  117 tggtctgtgtattg-aatatagagaaacacaca 148  Q
       ||||||||| | |||||||| |||| ||||    
T  10546056 ctctctgtgtatagaaatatagacaaactcaca 10546088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 10519315 - 10519402
Alignment:
Q  158 gttattgaagttctctttaaaaat-aaacaaaattgttcaactagcaatgaaactacaaaacacatgttatcaatagcagtgtgaagca 245  Q
    |||| ||||||| |||||| |||| |||||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||||||    
T  10519315 gttactgaagttgtctttataaattaaacaaaattgttcaagtagcaat-aaactacaaaacccatgttatcaatatcagtgtgaagca 10519402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 10508382 - 10508443
Alignment:
Q  67 gtcaataaaaattaaatattatacgtttctaaatctgaactgaagttagatggtctgtgtat 128  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  10508382 gtcaagaacaattaaatattatacgtttctaaatgtgaactgaagttagatgctctgtgtat 10508443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 10508547 - 10508619
Alignment:
Q  156 atgttattgaagttctcttta-aaaataaacaaaattgttcaactagcaatgaaactacaaaacacatgttat 227  Q
    |||||| |||||||||||||| ||||||||| ||||||||||| ||  ||| |||||||||||||||| ||||    
T  10508547 atgttactgaagttctctttataaaataaactaaattgttcaagtataaataaaactacaaaacacattttat 10508619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 10447562 - 10447618
Alignment:
Q  181 taaacaaaattgttcaactagcaatgaaactacaaaacacatgttatcaatagcagt 237  Q
    |||||||||||||| || ||| ||  |||||||||||| ||||||||| ||||||||    
T  10447562 taaacaaaattgtttaaatagaaacaaaactacaaaacccatgttatccatagcagt 10447618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 33578548 - 33578497
Alignment:
Q  49 attataaaaatgcccaaggtcaataaaaattaaatattatacgtttctaaat 100  Q
    |||||| ||||| ||||||||||||| |||||||||||||| ||||||||||    
T  33578548 attatataaatgtccaaggtcaataataattaaatattataggtttctaaat 33578497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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