View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16943_low_68 (Length: 250)
Name: NF16943_low_68
Description: NF16943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16943_low_68 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 54 - 250
Target Start/End: Complemental strand, 11412510 - 11412314
Alignment:
| Q |
54 |
gatcgcaagatctgtgtgaaggtataatagcttttcactttttcaattttgttcattgattatattctttggatgtgatgatagtaattgtcgccacagt |
153 |
Q |
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| T |
11412510 |
gatcgcaagatctgtgtgaaggtataatagcttttcactttttcaattctgttcattgattatattctttggatgtgatgatagtaattgtcgccccagt |
11412411 |
T |
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| Q |
154 |
cttaatttgcacctaaggtgtaatatggtgactggcactttgatctaacaaacatgcactaccatttgatctcttgcgaattattgtattttgttta |
250 |
Q |
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| T |
11412410 |
cttaatttgcacctaaggtgtaatatggtgactgacactttgatctaacaaacatgcactaccatttgatctcttgcgaattattgtattttgttta |
11412314 |
T |
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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 35544773 - 35544843
Alignment:
| Q |
124 |
ggatgtgatgatagtaattgtcgccacagtcttaatttgcacctaaggtgtaatatggtgactggcacttt |
194 |
Q |
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| T |
35544773 |
ggatgtgatgatagtaattgtcgccccagtcttaatttgcaccaatggtgtaatatggtgactgacacttt |
35544843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 35544708 - 35544758
Alignment:
| Q |
54 |
gatcgcaagatctgtgtgaaggt---ataatagcttttcactttttcaatt |
101 |
Q |
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| T |
35544708 |
gatcgcaagatctgtgtaaaggtataataatagcttttaactttttcaatt |
35544758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 35545120 - 35545156
Alignment:
| Q |
200 |
aacaaacatgcactaccatttgatctcttgcgaatta |
236 |
Q |
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| T |
35545120 |
aacaaacatgcactaccatctgatctcttgcaaatta |
35545156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 16935614 - 16935573
Alignment:
| Q |
124 |
ggatgtgatgatagtaattgtcgccacagtcttaatttgcac |
165 |
Q |
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| T |
16935614 |
ggatgtgatgatagtaattgtcgccccagtcttaatttgcac |
16935573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 16936423 - 16936382
Alignment:
| Q |
124 |
ggatgtgatgatagtaattgtcgccacagtcttaatttgcac |
165 |
Q |
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| T |
16936423 |
ggatgtgatgatagtaattgtcgccccagtcttaattggcac |
16936382 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 17723139 - 17723173
Alignment:
| Q |
21 |
tataaccaggcatatcttgccaacattttaaaaga |
55 |
Q |
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| T |
17723139 |
tataaccaggcatatcttgccaacatttcaaaaga |
17723173 |
T |
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